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author:"Kojima A"

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Current Database

  • EMDB [9]
  • EMPIAR [1]

Current status

  • REL [10]

Sample type

  • Complex [9]
  • Protein [9]
  • Ligand [7]

Organism

  • Homo sapiens [9]
  • Mus musculus [3]
  • Synthetic construct [2]

EM Method

  • Single-particle [9]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [6]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [5]
  • 100-250 kDa [3]

Release Date

  • 2026 [7]
  • 2025 [3]

Author by name

  • Fukuda M [10]
  • Kato HE [10]
  • Kawakami K [10]
  • Kobayashi K [10]
  • Kojima A [10]
  • Matsui TE [10]
  • Gu Y [7]
  • Kobayashi N [7]
  • Uemoto K [7]
  • Dror RO [3]
  • Fukunaga A [3]
  • Ikeda H [3]
  • Inoue A [3]
  • Inoue WJ [3]
  • Ishikita H [3]
  • Kim S [3]
  • Kise R [3]
  • Kugawa M [3]
  • Saito K [3]
  • Suomivuori CM [3]
  • Tsujimura M [3]
  • Yamashita K [3]
  • Inoue W [2]
  • Koyanagi J [2]
  • Kobayashi J [1]

Author by ORCID

  • Kato HE [2]
  • Saito K [2]
  • Suomivuori CM [2]
  • Kawakami K [2]
  • Kim S [2]
  • Kobayashi K [2]
  • Yamashita K [2]
  • Ishikita H [2]
  • Dror RO [2]
  • Tsujimura M [2]
  • Fukuda M [2]
  • Inoue A [2]

Journal

  • BIORXIV [7]
  • NAT COMMUN [3]

Microscope

  • TFS KRIOS [8]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [9]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [9]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]

External links

  • AlphaFold DB [9]
  • PDB [9]
  • PDBe-Kb [9]
  • Pfam [9]
  • UniProt [9]
  • ChEMBL [3]
  • ChEBI [2]
  • DrugBank [2]
  • EMPIAR [2]
  • Gene Ontology [2]
  • InterPro [2]
  • Complex Portal [1]
  • EMDB [1]
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EMD-64536
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Cryo-EM structure of bradykinin B2 receptor B2R -BRIL/anti BRIL SRP2070 Fab antibody complex with icatibant
Release date: May 6, 2026
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9uvt
Q-score: 0.417

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64537
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Cryo-EM structure of bradykinin B2 receptor B2R -BRIL/anti BRIL SRP2070 Fab antibody complex with icatibant, focused on receptor
Release date: May 6, 2026
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 9uvu
Q-score: 0.387

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64538
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Cryo-EM structure of Vasopressin receptor 2 V2R -BRIL/anti BRIL SRP2070 Fab antibody complex with tolvaptan
Release date: May 6, 2026
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9uvv
Q-score: 0.491

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64539
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3D View
Cryo-EM structure of Vasopressin receptor 2 V2R -BRIL/anti BRIL SRP2070 Fab antibody complex with tolvaptan, focused on receptor
Release date: May 6, 2026
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 9uvw
Q-score: 0.484

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64540
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Cryo-EM structure of Vasopressin receptor 2 V2R -BRIL/anti BRIL SRP2070 Fab antibody complex with OPC51803, focused on receptor
Release date: May 6, 2026
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 9uvx
Q-score: 0.433

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64541
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Cryo-EM structure of Vasopressin receptor 2 V2R -ARK1 with tolvaptan
Release date: May 6, 2026
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9uvy
Q-score: 0.492

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64542
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Cryo-EM structure of Lysophosphatidic acid receptor 2 LPA2 -ARK1 with Ki16425
Release date: May 6, 2026
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9uvz
Q-score: 0.545

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMPIAR-12493
Related EMDB
EMD-39003 EMD-39004
Cryo-EM structures of TUG-1375/4-CMTB-bound active FFA2 and GLPG0974-bound inactive FFA2
Release date: June 27, 2025
Dataset size: 5.7 TB
Experiment type: EMDB

Kise R, Kojima A, Inoue WJ, Matsui TE, Fukunaga A, Kobayashi J, Kim S, Ikeda H, Yamashita K, Saito K, Ishikita H, Dror RO, Inoue A, Kato HE, Kawakami K, Suomivuori CM, Tsujimura M, Kobayashi K, Kojima A, Fukuda M, Matsui TE, Fukunaga A, Koyanagi J, Kim S, Ikeda H, Saito K, Inoue A

Nat Commun (2025) 16 [ Pubmed: 40140663 DOI: 10.1038/s41467-025-57983-4 ]

Image sets:
  • TUG-1375 and 4-CMTB-bound human FFA2 in complex with Gi
  • GLPG0974-bound human FFA2
EMD-39003
Download Map
3D View
Raw data
EMPIAR-12493
TUG-1375 and 4-CMTB-bound human FFA2 in complex with Gi
CryoEM
Release date: April 2, 2025
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8y6w
Q-score: 0.477

Kugawa M, Kawakami K, Kise R, Suomivuori CM, Tsujimura M, Kobayashi K, Kojima A, Inoue WJ, Fukuda M, Matsui TE, Fukunaga A, Koyanagi J, Kim S, Ikeda H, Yamashita K, Saito K, Ishikita H, Dror RO, Inoue A, Kato HE

Nat Commun (2025) 16 pp. 2809-2809 [ Pubmed: 40140663 DOI: doi:10.1038/s41467-025-57983-4 ]

EMD-39004
Download Map
3D View
Raw data
EMPIAR-12493
GLPG0974-bound human FFA2
CryoEM
Release date: April 2, 2025
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8y6y
Q-score: 0.375

Kugawa M, Kawakami K, Kise R, Suomivuori CM, Tsujimura M, Kobayashi K, Kojima A, Inoue WJ, Fukuda M, Matsui TE, Fukunaga A, Koyanagi J, Kim S, Ikeda H, Yamashita K, Saito K, Ishikita H, Dror RO, Inoue A, Kato HE

Nat Commun (2025) 16 pp. 2809-2809 [ Pubmed: 40140663 DOI: doi:10.1038/s41467-025-57983-4 ]

Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [9]
  • EMPIAR [1]

Current status

  • REL [10]

Sample type

  • Complex [9]
  • Protein [9]
  • Ligand [7]

Organism

  • Homo sapiens [9]
  • Mus musculus [3]
  • Synthetic construct [2]

EM Method

  • Single-particle [9]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [6]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [5]
  • 100-250 kDa [3]

Release Date

  • 2026 [7]
  • 2025 [3]

Author by name

  • Fukuda M [10]
  • Kato HE [10]
  • Kawakami K [10]
  • Kobayashi K [10]
  • Kojima A [10]
  • Matsui TE [10]
  • Gu Y [7]
  • Kobayashi N [7]
  • Uemoto K [7]
  • Dror RO [3]
  • Fukunaga A [3]
  • Ikeda H [3]
  • Inoue A [3]
  • Inoue WJ [3]
  • Ishikita H [3]
  • Kim S [3]
  • Kise R [3]
  • Kugawa M [3]
  • Saito K [3]
  • Suomivuori CM [3]
  • Tsujimura M [3]
  • Yamashita K [3]
  • Inoue W [2]
  • Koyanagi J [2]
  • Kobayashi J [1]

Author by ORCID

  • Kato HE [2]
  • Saito K [2]
  • Suomivuori CM [2]
  • Kawakami K [2]
  • Kim S [2]
  • Kobayashi K [2]
  • Yamashita K [2]
  • Ishikita H [2]
  • Dror RO [2]
  • Tsujimura M [2]
  • Fukuda M [2]
  • Inoue A [2]

Journal

  • BIORXIV [7]
  • NAT COMMUN [3]

Microscope

  • TFS KRIOS [8]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [9]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [9]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]

External links

  • AlphaFold DB [9]
  • PDB [9]
  • PDBe-Kb [9]
  • Pfam [9]
  • UniProt [9]
  • ChEMBL [3]
  • ChEBI [2]
  • DrugBank [2]
  • EMPIAR [2]
  • Gene Ontology [2]
  • InterPro [2]
  • Complex Portal [1]
  • EMDB [1]