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author:"Kobayashi N"

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Current Database

  • EMDB [9]

Current status

  • REL [9]

Sample type

  • Complex [9]
  • Protein [9]
  • Ligand [5]

Organism

  • Homo sapiens [8]
  • Mus musculus [2]
  • Synthetic construct [2]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [8]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [4]
  • ≥ 3Å and < 4Å [5]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [5]
  • 100-250 kDa [3]

Release Date

  • 2026 [7]
  • 2025 [1]
  • 2024 [1]

Author by name

  • Kobayashi N [9]
  • Fukuda M [7]
  • Gu Y [7]
  • Kato HE [7]
  • Kawakami K [7]
  • Kobayashi K [7]
  • Kojima A [7]
  • Matsui TE [7]
  • Uemoto K [7]
  • Araiso Y [1]
  • Becker HD [1]
  • Endo T [1]
  • Friant S [1]
  • Goto C [1]
  • Hirashima T [1]
  • Ishii Y [1]
  • Kikkawa M [1]
  • Kodama Y [1]
  • Kodera N [1]
  • Konishi Y [1]
  • Matsuda I [1]
  • Matsunaga T [1]
  • Mcelheny D [1]
  • Ono H [1]
  • Sakaue H [1]
  • Sato M [1]
  • Senger B [1]
  • Shiino H [1]
  • Shinoda S [1]
  • Shirouzu M [1]
  • Takeda H [1]
  • Tamura Y [1]
  • Tehrani MJ [1]
  • Tomii K [1]
  • Toyooka K [1]
  • Tsutsumi A [1]
  • Yamagata A [1]
  • Yamamori Y [1]
  • Zhang C [1]
  • Zuttion S [1]

Author by ORCID

  • Kikkawa M [1]
  • Endo T [1]
  • Yamagata A [1]
  • Matsuda I [1]
  • Tomii K [1]
  • Senger B [1]
  • Friant S [1]
  • Toyooka K [1]
  • Tehrani MJ [1]
  • Ishii Y [1]
  • Shirouzu M [1]
  • Tamura Y [1]
  • Hirashima T [1]
  • Sato M [1]
  • Yamamori Y [1]
  • Kodama Y [1]
  • Kodera N [1]
  • Ono H [1]
  • Konishi Y [1]
  • Shinoda S [1]

Journal

  • BIORXIV [7]
  • NAT COMMUN [2]

Software

  • RELION [1]

Microscope

  • TFS KRIOS [8]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [8]
  • OTHER [1]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [8]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]

External links

  • AlphaFold DB [9]
  • PDB [9]
  • PDBe-Kb [9]
  • UniProt [9]
  • Pfam [8]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • InterPro [2]
  • Gene Ontology [1]
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EMD-64536
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Cryo-EM structure of bradykinin B2 receptor B2R -BRIL/anti BRIL SRP2070 Fab antibody complex with icatibant
Release date: May 6, 2026
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9uvt
Q-score: 0.417

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64537
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Cryo-EM structure of bradykinin B2 receptor B2R -BRIL/anti BRIL SRP2070 Fab antibody complex with icatibant, focused on receptor
Release date: May 6, 2026
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 9uvu
Q-score: 0.387

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64538
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Cryo-EM structure of Vasopressin receptor 2 V2R -BRIL/anti BRIL SRP2070 Fab antibody complex with tolvaptan
Release date: May 6, 2026
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9uvv
Q-score: 0.491

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64539
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Cryo-EM structure of Vasopressin receptor 2 V2R -BRIL/anti BRIL SRP2070 Fab antibody complex with tolvaptan, focused on receptor
Release date: May 6, 2026
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 9uvw
Q-score: 0.484

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64540
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Cryo-EM structure of Vasopressin receptor 2 V2R -BRIL/anti BRIL SRP2070 Fab antibody complex with OPC51803, focused on receptor
Release date: May 6, 2026
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 9uvx
Q-score: 0.433

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64541
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Cryo-EM structure of Vasopressin receptor 2 V2R -ARK1 with tolvaptan
Release date: May 6, 2026
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9uvy
Q-score: 0.492

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-64542
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Cryo-EM structure of Lysophosphatidic acid receptor 2 LPA2 -ARK1 with Ki16425
Release date: May 6, 2026
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9uvz
Q-score: 0.545

Kojima A, Kawakami K, Kobayashi N, Kobayashi K, Matsui TE, Uemoto K, Gu Y, Fukuda M, Kato HE

bioRxiv (2026) [ DOI: doi:10.64898/2026.04.02.716066 ]

EMD-61843
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Yeast Mitochondrial PORIN complex
CryoEM
Release date: Aug. 13, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9jvq
Q-score: 0.41

Takeda H, Shinoda S, Goto C, Tsutsumi A, Sakaue H, Zhang C, Hirashima T, Konishi Y, Ono H, Yamamori Y, Tomii K, Shiino H, Tamura Y, Zuttion S, Senger B, Friant S, Becker HD, Araiso Y, Kobayashi N, Kodera N, Kikkawa M, Endo T

Nat Commun (2025) 16 pp. 6854-6854 [ Pubmed: 40715117 DOI: doi:10.1038/s41467-025-62021-4 ]

EMD-35972
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CryoEM Structure of 40-Residue Arctic E22G Beta-Amyloid Fibril Derived by Co-Analysis with Solid-State NMR E22G Abeta40
CryoEM
Release date: Sept. 11, 2024
Resolution: 2.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 8j47
Q-score: 0.616

Tehrani MJ, Matsuda I, Yamagata A, Kodama Y, Matsunaga T, Sato M, Toyooka K, McElheny D, Kobayashi N, Shirouzu M, Ishii Y

Nat Commun (2024) 15 pp. 7045-7045 [ Pubmed: 39147751 DOI: doi:10.1038/s41467-024-51294-w ]

Sort by: Download
Showing 1 - 9 of 9. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [9]

Current status

  • REL [9]

Sample type

  • Complex [9]
  • Protein [9]
  • Ligand [5]

Organism

  • Homo sapiens [8]
  • Mus musculus [2]
  • Synthetic construct [2]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [8]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [4]
  • ≥ 3Å and < 4Å [5]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [5]
  • 100-250 kDa [3]

Release Date

  • 2026 [7]
  • 2025 [1]
  • 2024 [1]

Author by name

  • Kobayashi N [9]
  • Fukuda M [7]
  • Gu Y [7]
  • Kato HE [7]
  • Kawakami K [7]
  • Kobayashi K [7]
  • Kojima A [7]
  • Matsui TE [7]
  • Uemoto K [7]
  • Araiso Y [1]
  • Becker HD [1]
  • Endo T [1]
  • Friant S [1]
  • Goto C [1]
  • Hirashima T [1]
  • Ishii Y [1]
  • Kikkawa M [1]
  • Kodama Y [1]
  • Kodera N [1]
  • Konishi Y [1]
  • Matsuda I [1]
  • Matsunaga T [1]
  • Mcelheny D [1]
  • Ono H [1]
  • Sakaue H [1]
  • Sato M [1]
  • Senger B [1]
  • Shiino H [1]
  • Shinoda S [1]
  • Shirouzu M [1]
  • Takeda H [1]
  • Tamura Y [1]
  • Tehrani MJ [1]
  • Tomii K [1]
  • Toyooka K [1]
  • Tsutsumi A [1]
  • Yamagata A [1]
  • Yamamori Y [1]
  • Zhang C [1]
  • Zuttion S [1]

Author by ORCID

  • Kikkawa M [1]
  • Endo T [1]
  • Yamagata A [1]
  • Matsuda I [1]
  • Tomii K [1]
  • Senger B [1]
  • Friant S [1]
  • Toyooka K [1]
  • Tehrani MJ [1]
  • Ishii Y [1]
  • Shirouzu M [1]
  • Tamura Y [1]
  • Hirashima T [1]
  • Sato M [1]
  • Yamamori Y [1]
  • Kodama Y [1]
  • Kodera N [1]
  • Ono H [1]
  • Konishi Y [1]
  • Shinoda S [1]

Journal

  • BIORXIV [7]
  • NAT COMMUN [2]

Software

  • RELION [1]

Microscope

  • TFS KRIOS [8]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [8]
  • OTHER [1]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [8]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]

External links

  • AlphaFold DB [9]
  • PDB [9]
  • PDBe-Kb [9]
  • UniProt [9]
  • Pfam [8]
  • ChEBI [2]
  • ChEMBL [2]
  • DrugBank [2]
  • InterPro [2]
  • Gene Ontology [1]