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author:"Kaksonen M"

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Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Cell [10]
  • Protein [4]
  • Complex [2]
  • Sample [2]

Organism

  • Saccharomyces cerevisiae [12]
  • Homo sapiens [2]
  • Saccharomyces cerevisiae [1]

EM Method

  • Tomography [9]
  • Single-particle [4]
  • Subtomogram averaging [1]

Resolution

  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 500-1000 kDa [2]
  • 2-5 MDa [1]

Release Date

  • 2026 [10]
  • 2016 [2]
  • 2015 [2]

Author by name

  • Kaksonen M [14]
  • Kukulski W [12]
  • Picco A [10]
  • Boinet AL [8]
  • Ivanovic L [8]
  • Ross-kaschitza D [8]
  • Zinn E [8]
  • Briggs JA [4]
  • Hagen WJ [4]
  • Jakobi AJ [4]
  • Sachse C [4]
  • Abella M [2]
  • Bernat-silvestre C [2]
  • Bertipaglia C [2]
  • Briggs JAG [2]
  • Bykov YS [2]
  • Colom A [2]
  • Desfosses A [2]
  • Dodonova SO [2]
  • Espadas J [2]
  • Ganeva I [2]
  • Gieras A [2]
  • Gul M [2]
  • Hagen WJH [2]
  • Hakala M [2]
  • Kosinski J [2]
  • Kudryashev M [2]
  • Marcuello C [2]
  • Meijers R [2]
  • Moparthi SB [2]
  • Prinz S [2]
  • Ravichandran AC [2]
  • Roux A [2]
  • Rybin V [2]
  • Schneider S [2]
  • Schulz J [2]
  • Skruzny M [2]
  • Tarafder AK [2]
  • Uetrecht C [2]
  • Vassilopoulos S [2]
  • Wilmanns M [2]

Author by ORCID

  • Kukulski W [12]
  • Hagen WJ [4]
  • Jakobi AJ [4]
  • Kaksonen M [4]
  • Moparthi SB [2]
  • Schneider S [2]
  • Tarafder AK [2]
  • Sachse C [2]
  • Uetrecht C [2]
  • Hakala M [2]
  • Kosinski J [2]
  • Espadas J [2]
  • Kaksonen M [2]
  • Dodonova SO [2]
  • Gieras A [2]
  • Roux A [2]
  • Desfosses A [2]
  • Vassilopoulos S [2]
  • Wilmanns M [2]
  • Picco A [2]
  • Meijers R [2]
  • Bykov YS [2]
  • Marcuello C [2]
  • Kudryashev M [2]
  • Briggs JA [2]
  • Briggs JA [2]
  • Sachse C [2]
  • Skruzny M [2]
  • Colom A [2]

Journal

  • J CELL SCI [8]
  • DEV CELL [2]
  • EMBO REP [2]
  • NAT COMMUN [2]

Software

  • IMOD [9]
  • EMAN [2]
  • SPRING [2]
  • DYNAMO [1]
  • I-TASSER, CHIMERA, DIREX [1]
  • RELION [1]
  • SPIDER [1]

Microscope

  • FEI TECNAI SPIRIT [7]
  • FEI TITAN KRIOS [3]
  • TFS KRIOS [3]
  • FEI/PHILIPS CM12 [1]

Electron Source

  • TUNGSTEN HAIRPIN [7]
  • FIELD EMISSION GUN [6]
  • LAB6 [1]

Film or detector model

  • FEI EAGLE 4K X 4K [7]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • FEI FALCON II 4K X 4K [1]
  • TVIPS TEMCAM-F415 4K X 4K [1]

External links

  • PDB [14]
  • AlphaFold DB [4]
  • InterPro [4]
  • PDBe-Kb [4]
  • UniProt [4]
  • Gene Ontology [2]
  • Pfam [2]
Sort by: Download
Showing 1 - 10 of 14. Page 1 of 2
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Preview first 10
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EMD-56110
Download Map
3D View
Flat clathrin lattice on endosomes
CryoEM
Release date: May 20, 2026
Resolution: 44.0 Å
EM Method: Subtomogram averaging

Hakala M, Moparthi SB, Ganeva I, Gul M, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kudryashev M, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-73132-x Pubmed: 42120412 ]

EMD-56112
Download Map
3D View
Cryo-electron tomogram of endosomes in HeLa cells
CryoEM
Release date: May 20, 2026
EM Method: Tomography

Hakala M, Moparthi SB, Ganeva I, Gul M, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kudryashev M, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-73132-x Pubmed: 42120412 ]

EMD-57520
Download Map
3D View
Electron tomogram of resin-embedded yeast cells expressing Tcb3 1-272 -GFP-chimeraC, deleted for tcb1/2, scs2/22 and ist2
CryoEM
Release date: May 20, 2026
EM Method: Tomography

Ivanovic L, Boinet AL, Picco A, Zinn E, Ross-Kaschitza D, Kaksonen M, Kukulski W

J Cell Sci (2026) 139 [ DOI: doi:10.1242/jcs.264421 Pubmed: 41948883 ]

EMD-57516
Download Map
3D View
Electron tomogram of resin-embedded wild type yeast cells expressing Tcb3 1-490 -chimeraC-GFP
CryoEM
Release date: May 6, 2026
EM Method: Tomography

Ivanovic L, Boinet AL, Picco A, Zinn E, Ross-Kaschitza D, Kaksonen M, Kukulski W

J Cell Sci (2026) 139 [ DOI: doi:10.1242/jcs.264421 Pubmed: 41948883 ]

EMD-57517
Download Map
3D View
Electron tomogram of resin-embedded yeast cells expressing Tcb3 1-490 -chimeraC-GFP, deleted for tcb1/2
CryoEM
Release date: May 6, 2026
EM Method: Tomography

Ivanovic L, Boinet AL, Picco A, Zinn E, Ross-Kaschitza D, Kaksonen M, Kukulski W

J Cell Sci (2026) 139 [ DOI: doi:10.1242/jcs.264421 Pubmed: 41948883 ]

EMD-57518
Download Map
3D View
Electron tomogram of resin-embedded yeast cells expressing Tcb3 1-490 -chimeraC-GFP, deleted for tcb1/2, scs2/22 and ist2
CryoEM
Release date: May 6, 2026
EM Method: Tomography

Ivanovic L, Boinet AL, Picco A, Zinn E, Ross-Kaschitza D, Kaksonen M, Kukulski W

J Cell Sci (2026) 139 [ DOI: doi:10.1242/jcs.264421 Pubmed: 41948883 ]

EMD-57519
Download Map
3D View
Electron tomogram of resin-embedded yeast cells expressing Tcb3 1-272 -chimeraC-GFP, deleted for tcb1/2, scs2/22 and ist2
CryoEM
Release date: May 6, 2026
EM Method: Tomography

Ivanovic L, Boinet AL, Picco A, Zinn E, Ross-Kaschitza D, Kaksonen M, Kukulski W

J Cell Sci (2026) 139 [ DOI: doi:10.1242/jcs.264421 Pubmed: 41948883 ]

EMD-57521
Download Map
3D View
Electron tomogram of resin-embedded yeast cells expressing Tcb3 191-490 -GFP-chimeraC, deleted for tcb1/2, scs2/22 and ist2
CryoEM
Release date: May 6, 2026
EM Method: Tomography

Ivanovic L, Boinet AL, Picco A, Zinn E, Ross-Kaschitza D, Kaksonen M, Kukulski W

J Cell Sci (2026) 139 [ DOI: doi:10.1242/jcs.264421 Pubmed: 41948883 ]

EMD-57522
Download Map
3D View
Electron tomogram of resin-embedded yeast cells expressing Tcb3 191-272 -chimeraC-GFP, deleted for tcb1/2, scs2/22 and ist2
CryoEM
Release date: May 6, 2026
EM Method: Tomography

Ivanovic L, Boinet AL, Picco A, Zinn E, Ross-Kaschitza D, Kaksonen M, Kukulski W

J Cell Sci (2026) 139 [ DOI: doi:10.1242/jcs.264421 Pubmed: 41948883 ]

EMD-57523
Download Map
3D View
Cryo-electron tomogram of yeast cells expressing Tcb3 191-490 -chimeraC-GFP, deleted for tcb1/2, scs2/22 and ist2.
CryoEM
Release date: May 6, 2026
EM Method: Tomography

Ivanovic L, Boinet AL, Picco A, Zinn E, Ross-Kaschitza D, Kaksonen M, Kukulski W

J Cell Sci (2026) 139 [ DOI: doi:10.1242/jcs.264421 Pubmed: 41948883 ]

Sort by: Download
Showing 1 - 10 of 14. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Cell [10]
  • Protein [4]
  • Complex [2]
  • Sample [2]

Organism

  • Saccharomyces cerevisiae [12]
  • Homo sapiens [2]
  • Saccharomyces cerevisiae [1]

EM Method

  • Tomography [9]
  • Single-particle [4]
  • Subtomogram averaging [1]

Resolution

  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 500-1000 kDa [2]
  • 2-5 MDa [1]

Release Date

  • 2026 [10]
  • 2016 [2]
  • 2015 [2]

Author by name

  • Kaksonen M [14]
  • Kukulski W [12]
  • Picco A [10]
  • Boinet AL [8]
  • Ivanovic L [8]
  • Ross-kaschitza D [8]
  • Zinn E [8]
  • Briggs JA [4]
  • Hagen WJ [4]
  • Jakobi AJ [4]
  • Sachse C [4]
  • Abella M [2]
  • Bernat-silvestre C [2]
  • Bertipaglia C [2]
  • Briggs JAG [2]
  • Bykov YS [2]
  • Colom A [2]
  • Desfosses A [2]
  • Dodonova SO [2]
  • Espadas J [2]
  • Ganeva I [2]
  • Gieras A [2]
  • Gul M [2]
  • Hagen WJH [2]
  • Hakala M [2]
  • Kosinski J [2]
  • Kudryashev M [2]
  • Marcuello C [2]
  • Meijers R [2]
  • Moparthi SB [2]
  • Prinz S [2]
  • Ravichandran AC [2]
  • Roux A [2]
  • Rybin V [2]
  • Schneider S [2]
  • Schulz J [2]
  • Skruzny M [2]
  • Tarafder AK [2]
  • Uetrecht C [2]
  • Vassilopoulos S [2]
  • Wilmanns M [2]

Author by ORCID

  • Kukulski W [12]
  • Hagen WJ [4]
  • Jakobi AJ [4]
  • Kaksonen M [4]
  • Moparthi SB [2]
  • Schneider S [2]
  • Tarafder AK [2]
  • Sachse C [2]
  • Uetrecht C [2]
  • Hakala M [2]
  • Kosinski J [2]
  • Espadas J [2]
  • Kaksonen M [2]
  • Dodonova SO [2]
  • Gieras A [2]
  • Roux A [2]
  • Desfosses A [2]
  • Vassilopoulos S [2]
  • Wilmanns M [2]
  • Picco A [2]
  • Meijers R [2]
  • Bykov YS [2]
  • Marcuello C [2]
  • Kudryashev M [2]
  • Briggs JA [2]
  • Briggs JA [2]
  • Sachse C [2]
  • Skruzny M [2]
  • Colom A [2]

Journal

  • J CELL SCI [8]
  • DEV CELL [2]
  • EMBO REP [2]
  • NAT COMMUN [2]

Software

  • IMOD [9]
  • EMAN [2]
  • SPRING [2]
  • DYNAMO [1]
  • I-TASSER, CHIMERA, DIREX [1]
  • RELION [1]
  • SPIDER [1]

Microscope

  • FEI TECNAI SPIRIT [7]
  • FEI TITAN KRIOS [3]
  • TFS KRIOS [3]
  • FEI/PHILIPS CM12 [1]

Electron Source

  • TUNGSTEN HAIRPIN [7]
  • FIELD EMISSION GUN [6]
  • LAB6 [1]

Film or detector model

  • FEI EAGLE 4K X 4K [7]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • FEI FALCON II 4K X 4K [1]
  • TVIPS TEMCAM-F415 4K X 4K [1]

External links

  • PDB [14]
  • AlphaFold DB [4]
  • InterPro [4]
  • PDBe-Kb [4]
  • UniProt [4]
  • Gene Ontology [2]
  • Pfam [2]