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author:"Howes SC"

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Current Database

  • EMDB [58]
  • EMPIAR [4]

Current status

  • REL [62]

Sample type

  • Cellular component [31]
  • Protein [17]
  • Complex [15]
  • Cell [14]
  • Ligand [10]
  • RNA [1]

Organism

  • Homo sapiens [29]
  • Sus scrofa [8]
  • Mus musculus [7]
  • Equus caballus [6]
  • Saccharomyces cerevisiae [5]
  • Sus scrofa [4]
  • Severe acute respiratory syndrome coronavirus [2]
  • Rattus norvegicus [1]
  • Pyrococcus furiosus [1]
  • Severe acute respiratory syndrome coronavirus [1]

EM Method

  • Subtomogram averaging [41]
  • Single-particle [8]
  • Helical reconstruction [7]
  • Tomography [2]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [8]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [11]
  • ≥ 8Å and < 12Å [5]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [2]
  • ≥ 30Å [17]

Release Date

  • 2026 [4]
  • 2025 [5]
  • 2023 [1]
  • 2022 [21]
  • 2021 [22]
  • 2018 [2]
  • 2017 [5]
  • 2016 [2]

Author by name

  • Howes SC [60]
  • Fedry J [24]
  • Forster F [24]
  • Albanese P [23]
  • Chaillet ML [23]
  • Scheltema RA [23]
  • Cuevas Arenas R [22]
  • Gemmer M [22]
  • Koh FA [22]
  • Kotecha A [22]
  • Vismpas D [22]
  • Van Loenhout J [22]
  • Bromfield EG [21]
  • Forster FG [21]
  • Grollers-mulderij M [21]
  • Zeev-ben-mordehai T [21]
  • Gadella BM [20]
  • Henning H [20]
  • Leung MR [20]
  • Maitan P [20]
  • Ravi RT [20]
  • Roelofs MC [20]
  • Zhang M [20]
  • Bloomfield-gadelha H [16]
  • Nogales E [7]
  • Zhang R [6]
  • Akhmanova A [5]
  • Geyer EA [5]
  • Kellogg EH [5]
  • Lafrance B [5]
  • Rice LM [5]
  • Westermann S [5]
  • Fedry JMM [4]
  • Heck AJR [4]
  • Hevler JF [4]
  • Saunders HAJ [4]
  • Stecker KE [4]
  • Zenezini Chiozzi R [4]
  • Gravett MSC [3]
  • Hoogebeen RA [3]
  • Schweizer D [3]
  • Akhmanova A. [2]
  • Beurskens FJ [2]
  • Bosch BJ [2]
  • Cade NI [2]
  • Choi SR [2]
  • Diaz JF [2]
  • Drulyte I [2]
  • Du W [2]
  • Duellberg C [2]
  • Foerster F [2]
  • Forth S [2]
  • Giono M [2]
  • Grigoriev IS [2]
  • Gros P [2]
  • Hoogebeen R.A. [2]
  • Howes S.C. [2]
  • Hurdiss DL [2]
  • Iyer SS [2]
  • Kapitein LC [2]
  • Kapoor TM [2]
  • Karhanova A [2]
  • Kleiner RE [2]
  • Koning RI [2]
  • Koster AJ [2]
  • Lansky Z [2]
  • Li W [2]
  • Liu RR [2]
  • Mahapatra V [2]
  • Meiring JCM [2]
  • Metallidou I [2]
  • Moore A [2]
  • Morren D [2]
  • Obal G [2]
  • Pamula MC [2]
  • Parren PWHI [2]
  • Pelster Jose A [2]
  • Roepman R [2]
  • Roepman R. [2]
  • Saunders H.A.J. [2]
  • Schuurman J [2]
  • Schweizer D. [2]
  • Sharp TH [2]
  • Skalidis I [2]
  • Song W [2]
  • Spoelstra MFM [2]
  • Stecker K.E. [2]
  • Stehbens SJ [2]
  • Steinmetz MO [2]
  • Surrey T [2]
  • Ti SC [2]
  • Ugurlar D [2]
  • Van Den Berg C.M. [2]
  • Wang C [2]
  • De Jong Rn [2]
  • De Kreuk Bj [2]
  • Van Kuppeveld Fjm [2]
  • Van Den Berg Cm [2]
  • Doroshev S [1]
  • Fiala J [1]

Journal

  • NATURE [22]
  • BIORXIV [18]
  • EMBO J [17]
  • J CELL BIOL [5]
  • NAT STRUCT MOL BIOL [4]
  • PNAS [4]
  • DEV CELL [2]
  • SCI ADV [2]
  • SCIENCE [2]
  • ELIFE [1]

Software

  • RELION [23]
  • PEET [20]
  • PYTOM [20]
  • FREALIGN [6]
  • CRYOSPARC [4]
  • IMOD [3]
  • DYNAMO [1]

Microscope

  • FEI TALOS ARCTICA [41]
  • FEI TITAN [7]
  • FEI TITAN KRIOS [6]
  • TFS KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [58]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [52]
  • GATAN K3 6K X 4K [2]
  • FEI FALCON II 4K X 4K [1]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

EMPIAR Experiment type

  • EMDB [3]
  • FIB-SEM [1]

EMPIAR Image category

  • TILT SERIES [3]
  • MICROGRAPHS - MULTIFRAME [1]

External links

  • EMPIAR [21]
  • AlphaFold DB [17]
  • EMDB [3]
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Showing 1 - 10 of 62. Page 1 of 7
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Preview 10 entries View All Download file
EMD-58507
Download Map
3D View
Discodermolide stabilised 14-protofilament microtubule C1 reconstruction
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.73 Å
EM Method: Single-particle

Meiring JCM, Mahapatra V, Liu RR, Gravett MSC, Morren D, Saunders HAJ, Choi SR, Pelster Jose A, Karhanova A, Metallidou I, Moore A, Spoelstra MFM, Grigoriev IS, Giono M, Iyer SS, Stehbens SJ, Diaz JF, Lansky Z, Stecker KE, Steinmetz MO, Howes SC, Kapitein LC, Akhmanova A

bioRxiv (2025) [ DOI: doi:10.64898/2025.12.20.695343 ]

EMD-58509
Download Map
3D View
Discodermolide stabilised 13-protofilament microtubule C1 reconstruction
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.47 Å
EM Method: Single-particle

Meiring JCM, Mahapatra V, Liu RR, Gravett MSC, Morren D, Saunders HAJ, Choi SR, Pelster Jose A, Karhanova A, Metallidou I, Moore A, Spoelstra MFM, Grigoriev IS, Giono M, Iyer SS, Stehbens SJ, Diaz JF, Lansky Z, Stecker KE, Steinmetz MO, Howes SC, Kapitein LC, Akhmanova A

bioRxiv (2025) [ DOI: doi:10.64898/2025.12.20.695343 ]

EMD-54641
Download Map
3D View
SPACA9 and MNMIP1 bound to the seam of manchette microtubules
CryoEM
Release date: June 17, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9s7g
Q-score: 0.431
Similar entry percentile: 31%

Judernatz JH, Doroshev S, Hoogebeen RA, Jonkers S, Schweizer D, Gravett MSC, Bromfield EG, Howes SC, Akhmanova A, Zhang R, Zeev-Ben-Mordehai T

EMBO J (2026) 45 pp. 5024-5045 [ Pubmed: 42286192 DOI: doi:10.1038/s44318-026-00833-w ]

EMPIAR-12630
Cryo-electron tomograms of an oxygen-induced tubular nanocompartment in Pyrococcus furiosus
Release date: March 27, 2026
Dataset size: 13.8 GB
Experiment type: FIB-SEM

Song W, Fiala J, Skalidis I, Albanese P, Patinios C, Chaillet ML, Kengen SWM, Scheltema RA, Howes SC, Heck AJR, Foerster F

To Be Published

Image sets:
  • Raw and motion-corrected tilt series of P.furiosus tomograms containing tubular nanocompartments, used for supplementary movies in Song et al. 2025
EMD-53127
Download Map
3D View
Cryo-EM structure of natively purified Rubrerythrin isolated from OSIT assemblies of the anaerobic extremophile P. furiosus
CryoEM
Release date: July 16, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9qg1
Q-score: 0.4
Similar entry percentile: 24%

Song W, Fiala J, Skalidis I, Albanese P, Patinios C, Chaillet ML, Kengen SW, Scheltema RA, Howes SC, Heck AJ, Forster F

eLife (2025) [ DOI: doi:10.7554/elife.106890.1 ]

EMPIAR-12499
Related EMDB
EMD-52359
Dynamic microtubule plus end architecture in presence of EB3.
Release date: April 7, 2025
Dataset size: 75.9 GB
Experiment type: EMDB

Saunders H.A.J., Van den Berg C.M., Hoogebeen R.A., Schweizer D., Stecker K.E., Roepman R., Howes S.C., Akhmanova A.

Nat Struct Mol Biol ()

Image sets:
  • Cryo-ET non-motion corrected multi-frame micrographs of in vitro microtubules grown in presence of EB3
EMD-52359
Download Map
3D View
Raw data
EMPIAR-12499
Dynamic microtubule plus end architecture in presence of EB3.
CryoEM
Release date: Feb. 5, 2025
EM Method: Tomography

Saunders HAJ, van den Berg CM, Hoogebeen RA, Schweizer D, Stecker KE, Roepman R, Howes SC, Akhmanova A

Nat Struct Mol Biol (2025) 32 pp. 979-994 [ DOI: doi:10.1038/s41594-025-01483-y Pubmed: 39856351 ]

EMD-52360
Download Map
3D View
Raw data
EMPIAR-12498
Microtubule plus end architecture in presence of the ciliary tip module.
CryoEM
Release date: Feb. 5, 2025
EM Method: Tomography

Saunders HAJ, van den Berg CM, Hoogebeen RA, Schweizer D, Stecker KE, Roepman R, Howes SC, Akhmanova A

Nat Struct Mol Biol (2025) 32 pp. 979-994 [ DOI: doi:10.1038/s41594-025-01483-y Pubmed: 39856351 ]

EMPIAR-12498
Related EMDB
EMD-52360
Microtubule plus end architecture in presence of the ciliary tip module.
Release date: Feb. 4, 2025
Dataset size: 58.0 GB
Experiment type: EMDB

Saunders H.A.J., Van den Berg C.M., Hoogebeen R.A., Schweizer D., Stecker K.E., Roepman R., Howes S.C., Akhmanova A.

Nat Struct Mol Biol ()

Image sets:
  • Cryo-ET non-motion corrected multi-frame micrographs of in vitro microtubules grown in presence of the ciliary tip module
EMPIAR-11751
Related EMDB
EMD-15875 EMD-15873 EMD-15892 EMD-15887 EMD-15870 EMD-15876 EMD-15877 EMD-15890 EMD-15885 EMD-15878 EMD-15880 EMD-15871 EMD-15874 EMD-15879 EMD-15872 EMD-15891 EMD-15884 EMD-15886 EMD-15888
Micrographs of ER-derived vesicles from HEK293F cells
Release date: Nov. 6, 2023
Dataset size: 1.1 TB
Experiment type: EMDB

Gemmer M, Chaillet ML, van Loenhout J, Cuevas Arenas R, Vismpas D, Gröllers-Mulderij M, Koh FA, Albanese P, Scheltema RA, Howes SC, Kotecha A, Fedry J, Förster F

Nature (2023) 614 pp. 160-167 [ Pubmed: 36697828 DOI: 10.1038/s41586-022-05638-5 ]

Image sets:
  • Unaligned gain-corrected micrographs of tilt-series on ER-derived vesicles from HEK293F cells
Sort by: Download
Showing 1 - 10 of 62. Page 1 of 7
Display:
Statistics
×

Download



Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [58]
  • EMPIAR [4]

Current status

  • REL [62]

Sample type

  • Cellular component [31]
  • Protein [17]
  • Complex [15]
  • Cell [14]
  • Ligand [10]
  • RNA [1]

Organism

  • Homo sapiens [29]
  • Sus scrofa [8]
  • Mus musculus [7]
  • Equus caballus [6]
  • Saccharomyces cerevisiae [5]
  • Sus scrofa [4]
  • Severe acute respiratory syndrome coronavirus [2]
  • Rattus norvegicus [1]
  • Pyrococcus furiosus [1]
  • Severe acute respiratory syndrome coronavirus [1]

EM Method

  • Subtomogram averaging [41]
  • Single-particle [8]
  • Helical reconstruction [7]
  • Tomography [2]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [7]
  • ≥ 4Å and < 5Å [8]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [11]
  • ≥ 8Å and < 12Å [5]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [2]
  • ≥ 30Å [17]

Release Date

  • 2026 [4]
  • 2025 [5]
  • 2023 [1]
  • 2022 [21]
  • 2021 [22]
  • 2018 [2]
  • 2017 [5]
  • 2016 [2]

Author by name

  • Howes SC [60]
  • Fedry J [24]
  • Forster F [24]
  • Albanese P [23]
  • Chaillet ML [23]
  • Scheltema RA [23]
  • Cuevas Arenas R [22]
  • Gemmer M [22]
  • Koh FA [22]
  • Kotecha A [22]
  • Vismpas D [22]
  • Van Loenhout J [22]
  • Bromfield EG [21]
  • Forster FG [21]
  • Grollers-mulderij M [21]
  • Zeev-ben-mordehai T [21]
  • Gadella BM [20]
  • Henning H [20]
  • Leung MR [20]
  • Maitan P [20]
  • Ravi RT [20]
  • Roelofs MC [20]
  • Zhang M [20]
  • Bloomfield-gadelha H [16]
  • Nogales E [7]
  • Zhang R [6]
  • Akhmanova A [5]
  • Geyer EA [5]
  • Kellogg EH [5]
  • Lafrance B [5]
  • Rice LM [5]
  • Westermann S [5]
  • Fedry JMM [4]
  • Heck AJR [4]
  • Hevler JF [4]
  • Saunders HAJ [4]
  • Stecker KE [4]
  • Zenezini Chiozzi R [4]
  • Gravett MSC [3]
  • Hoogebeen RA [3]
  • Schweizer D [3]
  • Akhmanova A. [2]
  • Beurskens FJ [2]
  • Bosch BJ [2]
  • Cade NI [2]
  • Choi SR [2]
  • Diaz JF [2]
  • Drulyte I [2]
  • Du W [2]
  • Duellberg C [2]
  • Foerster F [2]
  • Forth S [2]
  • Giono M [2]
  • Grigoriev IS [2]
  • Gros P [2]
  • Hoogebeen R.A. [2]
  • Howes S.C. [2]
  • Hurdiss DL [2]
  • Iyer SS [2]
  • Kapitein LC [2]
  • Kapoor TM [2]
  • Karhanova A [2]
  • Kleiner RE [2]
  • Koning RI [2]
  • Koster AJ [2]
  • Lansky Z [2]
  • Li W [2]
  • Liu RR [2]
  • Mahapatra V [2]
  • Meiring JCM [2]
  • Metallidou I [2]
  • Moore A [2]
  • Morren D [2]
  • Obal G [2]
  • Pamula MC [2]
  • Parren PWHI [2]
  • Pelster Jose A [2]
  • Roepman R [2]
  • Roepman R. [2]
  • Saunders H.A.J. [2]
  • Schuurman J [2]
  • Schweizer D. [2]
  • Sharp TH [2]
  • Skalidis I [2]
  • Song W [2]
  • Spoelstra MFM [2]
  • Stecker K.E. [2]
  • Stehbens SJ [2]
  • Steinmetz MO [2]
  • Surrey T [2]
  • Ti SC [2]
  • Ugurlar D [2]
  • Van Den Berg C.M. [2]
  • Wang C [2]
  • De Jong Rn [2]
  • De Kreuk Bj [2]
  • Van Kuppeveld Fjm [2]
  • Van Den Berg Cm [2]
  • Doroshev S [1]
  • Fiala J [1]

Journal

  • NATURE [22]
  • BIORXIV [18]
  • EMBO J [17]
  • J CELL BIOL [5]
  • NAT STRUCT MOL BIOL [4]
  • PNAS [4]
  • DEV CELL [2]
  • SCI ADV [2]
  • SCIENCE [2]
  • ELIFE [1]

Software

  • RELION [23]
  • PEET [20]
  • PYTOM [20]
  • FREALIGN [6]
  • CRYOSPARC [4]
  • IMOD [3]
  • DYNAMO [1]

Microscope

  • FEI TALOS ARCTICA [41]
  • FEI TITAN [7]
  • FEI TITAN KRIOS [6]
  • TFS KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [58]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [52]
  • GATAN K3 6K X 4K [2]
  • FEI FALCON II 4K X 4K [1]
  • FEI FALCON IV 4K X 4K [1]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

EMPIAR Experiment type

  • EMDB [3]
  • FIB-SEM [1]

EMPIAR Image category

  • TILT SERIES [3]
  • MICROGRAPHS - MULTIFRAME [1]

External links

  • EMPIAR [21]
  • AlphaFold DB [17]
  • EMDB [3]