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author:"Hou YM"

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Current Database

  • EMDB [58]
  • EMPIAR [2]

Current status

  • REL [60]

Sample type

  • Complex [58]
  • Protein [51]
  • RNA [49]
  • Ligand [33]
  • DNA [2]

Organism

  • Escherichia coli [28]
  • Escherichia coli [16]
  • Mycobacterium tuberculosis [9]
  • Mycobacterium tuberculosis [8]
  • Escherichia coli [3]
  • Neosartorya fumigata [3]
  • Neosartorya fumigata [2]
  • Mycolicibacterium smegmatis [1]
  • Streptomyces californicus [1]

EM Method

  • Single-particle [58]

Resolution

  • ≥ 2Å and < 3Å [21]
  • ≥ 3Å and < 4Å [36]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [5]
  • 500-1000 kDa [3]
  • 1-2 MDa [3]
  • 2-5 MDa [39]

Release Date

  • 2026 [21]
  • 2025 [14]
  • 2023 [1]
  • 2022 [17]
  • 2021 [7]

Author by name

  • Hou YM [55]
  • Gamper H [29]
  • Demo G [26]
  • Gamper HB [17]
  • Masuda I [17]
  • Carbone CE [16]
  • Korostelev AA [16]
  • Loveland AB [16]
  • Li H [14]
  • Dunham CM [13]
  • Kimbrough EM [13]
  • Nguyen HA [13]
  • Gonzalez RL [11]
  • Blaha G [10]
  • Dworkin J [10]
  • Hassan AH [10]
  • Nagarajan SN [10]
  • Nakano Y [10]
  • Pinkas M [10]
  • Vesela L [10]
  • Gamper Jr Hb [9]
  • Mattingly JM [9]
  • Cui Z [8]
  • Li X [8]
  • Sacchettini JC [8]
  • Shin J [8]
  • Zhang J [8]
  • Agrawal RK [7]
  • Bailey NA [7]
  • Banavali NK [7]
  • Li Y [7]
  • Majumdar S [7]
  • Manjari SR [7]
  • Ning W [7]
  • Ojha AK [7]
  • Svidritskiy E [7]
  • Becker HD [3]
  • Fischer F [3]
  • Hoffman RD [3]
  • Hou Y-M [3]
  • Huck L [3]
  • Itoh Y [3]
  • Ji J [3]
  • Kise Y [3]
  • Kleiner RE [3]
  • Mahmoudi N [3]
  • Mathieu F [3]
  • Murayama H [3]
  • Nishimura M [3]
  • Nureki O [3]
  • Sasha L [3]
  • Senger B [3]
  • Wang B [3]
  • Yakobov N [3]
  • Zuttion S [3]
  • Corro J [1]
  • Prusa J [1]
  • Sharma MR [1]
  • Stallings CL [1]
  • Treen R [1]

Author by ORCID

  • Hou YM [48]
  • Demo G [26]
  • Gamper H [19]
  • Masuda I [17]
  • Korostelev AA [16]
  • Dunham CM [11]
  • Pinkas M [10]
  • Hassan AH [10]
  • Gonzalez RL [10]
  • Li H [10]
  • Nagarajan SN [10]
  • Vesela L [10]
  • Gamper Jr Hb [9]
  • Shin J [8]
  • Zhang J [8]
  • Cui Z [8]
  • Gamper HB [7]
  • Loveland AB [7]
  • Mattingly JM [6]
  • Bailey NA [6]
  • Kimbrough EM [5]
  • Nguyen HA [5]
  • Wang B [3]
  • Nureki O [3]
  • Li H [3]
  • Murayama H [3]
  • Ojha AK [1]
  • Treen R [1]
  • Agrawal RK [1]
  • Stallings CL [1]
  • Banavali NK [1]
  • Sharma MR [1]

Journal

  • NAT COMMUN [43]
  • BIORXIV [16]
  • TO BE PUBLISHED [7]
  • NAT STRUCT MOL BIOL [3]
  • PNAS [1]

Software

  • FREALIGN [26]
  • CTFFIND [10]
  • CRYOSPARC [9]
  • GCTF [3]
  • RELION [3]
  • CISTEM [1]

Microscope

  • FEI TITAN KRIOS [26]
  • TFS KRIOS [23]
  • FEI TALOS ARCTICA [9]

Electron Source

  • FIELD EMISSION GUN [58]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [21]
  • GATAN K3 6K X 4K [20]
  • GATAN K3 BIOQUANTUM 6K X 4K [14]
  • GATAN K3 BIOCONTINUUM 6K X 4K [3]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [2]

External links

  • AlphaFold DB [51]
  • PDB [51]
  • UniProt [51]
  • PDBe-Kb [48]
  • Pfam [48]
  • Gene Ontology [47]
  • InterPro [44]
  • ChEBI [33]
  • DrugBank [33]
  • ChEMBL [31]
  • Complex Portal [22]
  • EMPIAR [9]
  • EMDB [2]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 60. Page 1 of 6
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Preview 10 entries View All Download file
EMD-47384
Download Map
3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9e16
Q-score: 0.333
Similar entry percentile: 4%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47419
Download Map
3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 9e1s
Q-score: 0.333
Similar entry percentile: 2%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47876
Download Map
3D View
Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9ebb
Q-score: 0.512
Similar entry percentile: 43%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47899
Download Map
3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA fMet and deacylated tRNA at ribosome P and E sites.
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9ec3
Q-score: 0.461
Similar entry percentile: 48%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47909
Download Map
3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to Mycobacterium tuberculosis C- 70S ribosome
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.78 Å
EM Method: Single-particle

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47910
Download Map
3D View
Cryo-EM structure of the Mycobacterium tuberculosis C- 70S ribosome bound to fMet-tRNA fMet and deacylated tRNA at ribosome P and E sites
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.34 Å
EM Method: Single-particle

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-65772
Download Map
3D View
Cryo-EM structure of Aspergillus fumigatus ErdS tetramer
CryoEM
Release date: June 17, 2026
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9w9e
Q-score: 0.285
Similar entry percentile: 10%

Murayama H, Yakobov N, Mahmoudi N, Sasha L, Zuttion S, Senger B, Huck L, Gamper HB, Ji J, Kleiner RE, Nishimura M, Kise Y, Hou Y-M, Mathieu F, Becker HD, Itoh Y, Fischer F, Nureki O

To Be Published

EMD-65773
Download Map
3D View
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA Asp acceptor stem docked at the AspRS active site
CryoEM
Release date: June 17, 2026
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 9w9f
Q-score: 0.28
Similar entry percentile: 9%

Murayama H, Yakobov N, Mahmoudi N, Sasha L, Zuttion S, Senger B, Huck L, Gamper HB, Ji J, Kleiner RE, Nishimura M, Kise Y, Hou Y-M, Mathieu F, Becker HD, Itoh Y, Fischer F, Nureki O

To Be Published

EMD-65774
Download Map
3D View
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA Asp acceptor stem in an intermediate position toward the ATT active site
CryoEM
Release date: June 17, 2026
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9w9g
Q-score: 0.202
Similar entry percentile: 3%

Murayama H, Yakobov N, Mahmoudi N, Sasha L, Zuttion S, Senger B, Huck L, Gamper HB, Ji J, Kleiner RE, Nishimura M, Kise Y, Hou Y-M, Mathieu F, Becker HD, Itoh Y, Fischer F, Nureki O

To Be Published

EMPIAR-13308
Related EMDB
EMD-42714 EMD-42840 EMD-42852 EMD-42541
E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Release date: Feb. 20, 2026
Dataset size: 914.6 GB
Experiment type: EMDB

Kimbrough EM, Nguyen HA, Li H, Mattingly JM, Bailey NA, Ning W, Gamper H, Hou YM, Gonzalez RL, Dunham CM

Nat Commun (2025) 16 [ DOI: 10.1038/s41467-025-62342-4 Pubmed: 40789848 ]

Image sets:
  • Unaligned multi-frame micrographs of E. coli 70S ribosomes with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Sort by: Download
Showing 1 - 10 of 60. Page 1 of 6
Display:
Statistics
×

Download



Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [58]
  • EMPIAR [2]

Current status

  • REL [60]

Sample type

  • Complex [58]
  • Protein [51]
  • RNA [49]
  • Ligand [33]
  • DNA [2]

Organism

  • Escherichia coli [28]
  • Escherichia coli [16]
  • Mycobacterium tuberculosis [9]
  • Mycobacterium tuberculosis [8]
  • Escherichia coli [3]
  • Neosartorya fumigata [3]
  • Neosartorya fumigata [2]
  • Mycolicibacterium smegmatis [1]
  • Streptomyces californicus [1]

EM Method

  • Single-particle [58]

Resolution

  • ≥ 2Å and < 3Å [21]
  • ≥ 3Å and < 4Å [36]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [5]
  • 500-1000 kDa [3]
  • 1-2 MDa [3]
  • 2-5 MDa [39]

Release Date

  • 2026 [21]
  • 2025 [14]
  • 2023 [1]
  • 2022 [17]
  • 2021 [7]

Author by name

  • Hou YM [55]
  • Gamper H [29]
  • Demo G [26]
  • Gamper HB [17]
  • Masuda I [17]
  • Carbone CE [16]
  • Korostelev AA [16]
  • Loveland AB [16]
  • Li H [14]
  • Dunham CM [13]
  • Kimbrough EM [13]
  • Nguyen HA [13]
  • Gonzalez RL [11]
  • Blaha G [10]
  • Dworkin J [10]
  • Hassan AH [10]
  • Nagarajan SN [10]
  • Nakano Y [10]
  • Pinkas M [10]
  • Vesela L [10]
  • Gamper Jr Hb [9]
  • Mattingly JM [9]
  • Cui Z [8]
  • Li X [8]
  • Sacchettini JC [8]
  • Shin J [8]
  • Zhang J [8]
  • Agrawal RK [7]
  • Bailey NA [7]
  • Banavali NK [7]
  • Li Y [7]
  • Majumdar S [7]
  • Manjari SR [7]
  • Ning W [7]
  • Ojha AK [7]
  • Svidritskiy E [7]
  • Becker HD [3]
  • Fischer F [3]
  • Hoffman RD [3]
  • Hou Y-M [3]
  • Huck L [3]
  • Itoh Y [3]
  • Ji J [3]
  • Kise Y [3]
  • Kleiner RE [3]
  • Mahmoudi N [3]
  • Mathieu F [3]
  • Murayama H [3]
  • Nishimura M [3]
  • Nureki O [3]
  • Sasha L [3]
  • Senger B [3]
  • Wang B [3]
  • Yakobov N [3]
  • Zuttion S [3]
  • Corro J [1]
  • Prusa J [1]
  • Sharma MR [1]
  • Stallings CL [1]
  • Treen R [1]

Author by ORCID

  • Hou YM [48]
  • Demo G [26]
  • Gamper H [19]
  • Masuda I [17]
  • Korostelev AA [16]
  • Dunham CM [11]
  • Pinkas M [10]
  • Hassan AH [10]
  • Gonzalez RL [10]
  • Li H [10]
  • Nagarajan SN [10]
  • Vesela L [10]
  • Gamper Jr Hb [9]
  • Shin J [8]
  • Zhang J [8]
  • Cui Z [8]
  • Gamper HB [7]
  • Loveland AB [7]
  • Mattingly JM [6]
  • Bailey NA [6]
  • Kimbrough EM [5]
  • Nguyen HA [5]
  • Wang B [3]
  • Nureki O [3]
  • Li H [3]
  • Murayama H [3]
  • Ojha AK [1]
  • Treen R [1]
  • Agrawal RK [1]
  • Stallings CL [1]
  • Banavali NK [1]
  • Sharma MR [1]

Journal

  • NAT COMMUN [43]
  • BIORXIV [16]
  • TO BE PUBLISHED [7]
  • NAT STRUCT MOL BIOL [3]
  • PNAS [1]

Software

  • FREALIGN [26]
  • CTFFIND [10]
  • CRYOSPARC [9]
  • GCTF [3]
  • RELION [3]
  • CISTEM [1]

Microscope

  • FEI TITAN KRIOS [26]
  • TFS KRIOS [23]
  • FEI TALOS ARCTICA [9]

Electron Source

  • FIELD EMISSION GUN [58]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [21]
  • GATAN K3 6K X 4K [20]
  • GATAN K3 BIOQUANTUM 6K X 4K [14]
  • GATAN K3 BIOCONTINUUM 6K X 4K [3]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [2]

External links

  • AlphaFold DB [51]
  • PDB [51]
  • UniProt [51]
  • PDBe-Kb [48]
  • Pfam [48]
  • Gene Ontology [47]
  • InterPro [44]
  • ChEBI [33]
  • DrugBank [33]
  • ChEMBL [31]
  • Complex Portal [22]
  • EMPIAR [9]
  • EMDB [2]
  • SCOP2 [1]