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author:"Gamper HB"

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Current Database

  • EMDB [17]

Current status

  • REL [17]

Sample type

  • Complex [17]
  • Protein [15]
  • RNA [14]
  • Ligand [7]

Organism

  • Escherichia coli [7]
  • Mycobacterium tuberculosis [6]
  • Neosartorya fumigata [3]
  • Neosartorya fumigata [2]
  • Mycolicibacterium smegmatis [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [17]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [12]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [2]
  • 1-2 MDa [1]
  • 2-5 MDa [11]

Release Date

  • 2026 [9]
  • 2023 [1]
  • 2021 [7]

Author by name

  • Gamper HB [17]
  • Hou YM [14]
  • Agrawal RK [7]
  • Banavali NK [7]
  • Carbone CE [7]
  • Demo G [7]
  • Korostelev AA [7]
  • Li Y [7]
  • Loveland AB [7]
  • Majumdar S [7]
  • Manjari SR [7]
  • Masuda I [7]
  • Ojha AK [7]
  • Svidritskiy E [7]
  • Becker HD [3]
  • Fischer F [3]
  • Hou Y-M [3]
  • Huck L [3]
  • Itoh Y [3]
  • Ji J [3]
  • Kise Y [3]
  • Kleiner RE [3]
  • Mahmoudi N [3]
  • Mathieu F [3]
  • Murayama H [3]
  • Nishimura M [3]
  • Nureki O [3]
  • Sasha L [3]
  • Senger B [3]
  • Yakobov N [3]
  • Zuttion S [3]
  • Corro J [1]
  • Prusa J [1]
  • Sharma MR [1]
  • Stallings CL [1]
  • Treen R [1]

Author by ORCID

  • Hou YM [7]
  • Gamper HB [7]
  • Loveland AB [7]
  • Masuda I [7]
  • Demo G [7]
  • Korostelev AA [7]
  • Nureki O [3]
  • Murayama H [3]
  • Ojha AK [1]
  • Treen R [1]
  • Agrawal RK [1]
  • Stallings CL [1]
  • Banavali NK [1]
  • Sharma MR [1]

Journal

  • NAT COMMUN [7]
  • BIORXIV [6]
  • TO BE PUBLISHED [3]
  • PNAS [1]

Software

  • CRYOSPARC [8]
  • FREALIGN [7]
  • RELION [2]

Microscope

  • TFS KRIOS [9]
  • FEI TITAN KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [17]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [13]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [15]
  • PDB [15]
  • Pfam [15]
  • UniProt [15]
  • PDBe-Kb [12]
  • Gene Ontology [11]
  • InterPro [8]
  • ChEBI [7]
  • Complex Portal [7]
  • DrugBank [7]
  • ChEMBL [5]
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Showing 1 - 10 of 17. Page 1 of 2
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EMD-47384
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3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9e16
Q-score: 0.333
Similar entry percentile: 4%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47419
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3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 9e1s
Q-score: 0.333
Similar entry percentile: 2%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47876
Download Map
3D View
Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9ebb
Q-score: 0.512
Similar entry percentile: 43%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47899
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3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA fMet and deacylated tRNA at ribosome P and E sites.
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9ec3
Q-score: 0.461
Similar entry percentile: 48%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47909
Download Map
3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to Mycobacterium tuberculosis C- 70S ribosome
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.78 Å
EM Method: Single-particle

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47910
Download Map
3D View
Cryo-EM structure of the Mycobacterium tuberculosis C- 70S ribosome bound to fMet-tRNA fMet and deacylated tRNA at ribosome P and E sites
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.34 Å
EM Method: Single-particle

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-65772
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3D View
Cryo-EM structure of Aspergillus fumigatus ErdS tetramer
CryoEM
Release date: June 17, 2026
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9w9e
Q-score: 0.285
Similar entry percentile: 10%

Murayama H, Yakobov N, Mahmoudi N, Sasha L, Zuttion S, Senger B, Huck L, Gamper HB, Ji J, Kleiner RE, Nishimura M, Kise Y, Hou Y-M, Mathieu F, Becker HD, Itoh Y, Fischer F, Nureki O

To Be Published

EMD-65773
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3D View
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA Asp acceptor stem docked at the AspRS active site
CryoEM
Release date: June 17, 2026
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 9w9f
Q-score: 0.28
Similar entry percentile: 9%

Murayama H, Yakobov N, Mahmoudi N, Sasha L, Zuttion S, Senger B, Huck L, Gamper HB, Ji J, Kleiner RE, Nishimura M, Kise Y, Hou Y-M, Mathieu F, Becker HD, Itoh Y, Fischer F, Nureki O

To Be Published

EMD-65774
Download Map
3D View
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA Asp acceptor stem in an intermediate position toward the ATT active site
CryoEM
Release date: June 17, 2026
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 9w9g
Q-score: 0.202
Similar entry percentile: 3%

Murayama H, Yakobov N, Mahmoudi N, Sasha L, Zuttion S, Senger B, Huck L, Gamper HB, Ji J, Kleiner RE, Nishimura M, Kise Y, Hou Y-M, Mathieu F, Becker HD, Itoh Y, Fischer F, Nureki O

To Be Published

EMD-29397
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3D View
Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
CryoEM
Release date: May 17, 2023
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8fr8

Li Y, Majumdar S, Treen R, Sharma MR, Corro J, Gamper HB, Manjari SR, Prusa J, Banavali NK, Stallings CL, Hou YM, Agrawal RK, Ojha AK

PNAS (2023) 120 pp. e2302006120-e2302006120 [ DOI: doi:10.1073/pnas.2302006120 Pubmed: 37216503 ]

Sort by: Download
Showing 1 - 10 of 17. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [17]

Current status

  • REL [17]

Sample type

  • Complex [17]
  • Protein [15]
  • RNA [14]
  • Ligand [7]

Organism

  • Escherichia coli [7]
  • Mycobacterium tuberculosis [6]
  • Neosartorya fumigata [3]
  • Neosartorya fumigata [2]
  • Mycolicibacterium smegmatis [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [17]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [12]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [2]
  • 1-2 MDa [1]
  • 2-5 MDa [11]

Release Date

  • 2026 [9]
  • 2023 [1]
  • 2021 [7]

Author by name

  • Gamper HB [17]
  • Hou YM [14]
  • Agrawal RK [7]
  • Banavali NK [7]
  • Carbone CE [7]
  • Demo G [7]
  • Korostelev AA [7]
  • Li Y [7]
  • Loveland AB [7]
  • Majumdar S [7]
  • Manjari SR [7]
  • Masuda I [7]
  • Ojha AK [7]
  • Svidritskiy E [7]
  • Becker HD [3]
  • Fischer F [3]
  • Hou Y-M [3]
  • Huck L [3]
  • Itoh Y [3]
  • Ji J [3]
  • Kise Y [3]
  • Kleiner RE [3]
  • Mahmoudi N [3]
  • Mathieu F [3]
  • Murayama H [3]
  • Nishimura M [3]
  • Nureki O [3]
  • Sasha L [3]
  • Senger B [3]
  • Yakobov N [3]
  • Zuttion S [3]
  • Corro J [1]
  • Prusa J [1]
  • Sharma MR [1]
  • Stallings CL [1]
  • Treen R [1]

Author by ORCID

  • Hou YM [7]
  • Gamper HB [7]
  • Loveland AB [7]
  • Masuda I [7]
  • Demo G [7]
  • Korostelev AA [7]
  • Nureki O [3]
  • Murayama H [3]
  • Ojha AK [1]
  • Treen R [1]
  • Agrawal RK [1]
  • Stallings CL [1]
  • Banavali NK [1]
  • Sharma MR [1]

Journal

  • NAT COMMUN [7]
  • BIORXIV [6]
  • TO BE PUBLISHED [3]
  • PNAS [1]

Software

  • CRYOSPARC [8]
  • FREALIGN [7]
  • RELION [2]

Microscope

  • TFS KRIOS [9]
  • FEI TITAN KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [17]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [13]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [15]
  • PDB [15]
  • Pfam [15]
  • UniProt [15]
  • PDBe-Kb [12]
  • Gene Ontology [11]
  • InterPro [8]
  • ChEBI [7]
  • Complex Portal [7]
  • DrugBank [7]
  • ChEMBL [5]