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author:"Fujita J"

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Current Database

  • EMDB [36]
  • EMPIAR [13]

Current status

  • REL [49]

Sample type

  • Complex [36]
  • Protein [36]
  • Ligand [11]

Organism

  • Severe acute respiratory syndrome coronavirus [12]
  • Streptococcus thermophilus [8]
  • Homo sapiens [7]
  • Escherichia coli [6]
  • Mus musculus [5]
  • Vicugna pacos [4]
  • Klebsiella pneumoniae [3]
  • [mycoplasma] mobile [1]
  • Klebsiella pneumoniae [1]
  • Ureaplasma parvum [1]
  • Thermus thermophilus [1]
  • Thermus thermophilus [1]
  • Klebsiella pneumoniae [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [33]
  • Helical reconstruction [3]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [13]
  • ≥ 3Å and < 4Å [20]

Model molecular weight

  • 100-250 kDa [11]
  • 250-500 kDa [3]
  • 1-2 MDa [1]
  • 5-10 MDa [1]

Release Date

  • 2026 [8]
  • 2025 [5]
  • 2023 [21]
  • 2022 [15]

Author by name

  • Fujita J [48]
  • Namba K [48]
  • Inoue T [34]
  • Anzai I [31]
  • Matsuura Y [31]
  • Makino F [29]
  • Kato T [23]
  • Asahara H [21]
  • Kishikawa J [21]
  • Kumano S [21]
  • Moriguchi M [21]
  • Kishikawa JI [11]
  • Nishino K [8]
  • Taguchi A [8]
  • Watanabe T [8]
  • Hibino K [5]
  • Kamimura N [5]
  • Kasai K [5]
  • Kato Y [5]
  • Matsumura H [5]
  • Suzuki K [5]
  • Amesaka H [4]
  • Hara M [4]
  • Imura A [4]
  • Kajita T [4]
  • Kazuma Y [4]
  • Konishi T [4]
  • Konishi Y [4]
  • Kosaka Y [4]
  • Kuroda N [4]
  • Maeda R [4]
  • Miyakawa K [4]
  • Miyamoto Y [4]
  • Miyata T [4]
  • Nagata K [4]
  • Ono C [4]
  • Ryo A [4]
  • Sato K [4]
  • Shichinohe S [4]
  • Shirakawa K [4]
  • Taguwa S [4]
  • Takada K [4]
  • Takaori-kondo A [4]
  • Tanaka SI [4]
  • Torii S [4]
  • Yamaguchi K [4]
  • Yamaoka Y [4]
  • Yamazaki H [4]
  • Yoshizawa T [4]
  • Tsumoto K [3]
  • Akiba H [2]
  • Aoyama H [2]
  • Harada K [2]
  • Imadome K [2]
  • Imadome KI [2]
  • Ishii KJ [2]
  • Ito T [2]
  • Kamada H [2]
  • Kamitani W [2]
  • Kawamoto A [2]
  • Kobiyama K [2]
  • Minamitani T [2]
  • Ohno H [2]
  • Otsubo R [2]
  • Tanaka S [2]
  • Tanino H [2]
  • Toyonaga T [2]
  • Ueno S [2]
  • Yasui T [2]
  • Ekimoto T [1]
  • Fukuda Y [1]
  • Fukuzawa K [1]
  • Hamaguchi T [1]
  • Ikeguchi M [1]
  • Inoue M [1]
  • Ise T [1]
  • Kagoshima G [1]
  • Kanada R [1]
  • Kawakami K [1]
  • Matsumoto S [1]
  • Miyata M [1]
  • Moriya T [1]
  • Nagata S [1]
  • Nakura Y [1]
  • Nishiyama K [1]
  • Okuno Y [1]
  • Otsuki T [1]
  • Takaya D [1]
  • Tanabe M [1]
  • Tobita S [1]
  • Uchihashi T [1]
  • Uehara R [1]
  • Wu HN [1]
  • Yanagihara I [1]
  • Yin B [1]

Author by ORCID

  • Fujita J [33]
  • Anzai I [21]
  • Namba K [20]
  • Kishikawa JI [11]
  • Matsuura Y [8]
  • Makino F [8]
  • Nishino K [7]
  • Taguchi A [7]
  • Inoue T [6]
  • Kasai K [5]
  • Ryo A [4]
  • Takaori-kondo A [4]
  • Yamaoka Y [4]
  • Kazuma Y [4]
  • Maeda R [4]
  • Miyakawa K [4]
  • Yamaguchi K [4]
  • Shirakawa K [4]
  • Yamazaki H [4]
  • Watanabe T [4]
  • Imura A [4]
  • Konishi Y [4]
  • Sato K [4]
  • Matsumura H [3]
  • Aoyama H [2]
  • Akiba H [2]
  • Miyata T [2]
  • Kato T [2]
  • Amesaka H [2]
  • Tanaka SI [2]
  • Tsumoto K [1]
  • Ise T [1]
  • Nagata S [1]
  • Uchihashi T [1]
  • Kawakami K [1]
  • Nishiyama K [1]
  • Kamada H [1]
  • Toyonaga T [1]
  • Ohno H [1]
  • Kawamoto A [1]
  • Fukuda Y [1]
  • Miyata M [1]
  • Harada K [1]
  • Hamaguchi T [1]
  • Tobita S [1]

Journal

  • SCI REP [23]
  • TO BE PUBLISHED [12]
  • COMMUN BIOL [5]
  • NAT COMMUN [5]
  • SCI ADV [2]
  • J BIOL CHEM [1]
  • J MOL BIOL [1]

Software

  • RELION [23]
  • CRYOSPARC [18]

Microscope

  • JEOL CRYO ARM 300 [35]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [36]

Film or detector model

  • GATAN K3 6K X 4K [36]

EMPIAR Experiment type

  • EMDB [13]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [13]

External links

  • PDB [36]
  • AlphaFold DB [34]
  • UniProt [34]
  • PDBe-Kb [26]
  • Complex Portal [16]
  • Gene Ontology [15]
  • EMDB [13]
  • EMPIAR [13]
  • Pfam [13]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [10]
  • InterPro [8]
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EMD-66531
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3D View
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with ADP
CryoEM
Release date: June 3, 2026
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 9x46
Q-score: 0.508

Taguchi A, Fujita J, Namba K, Nishino K

To Be Published

EMD-66532
Download Map
3D View
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 1
CryoEM
Release date: June 3, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9x47
Q-score: 0.511

Taguchi A, Fujita J, Namba K, Nishino K

To Be Published

EMD-66533
Download Map
3D View
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 2
CryoEM
Release date: June 3, 2026
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 9x48
Q-score: 0.485

Taguchi A, Fujita J, Namba K, Nishino K

To Be Published

EMD-66534
Download Map
3D View
Cryo-EM structure of nucleotide-free Streptococcus thermophilus FoeAB 3
CryoEM
Release date: June 3, 2026
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 9x49
Q-score: 0.493

Taguchi A, Fujita J, Namba K, Nishino K

To Be Published

EMD-66535
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3D View
Cryo-EM structure of Streptococcus thermophilus FoeAB E504Q mutant in complex with ATP
CryoEM
Release date: June 3, 2026
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 9x4a
Q-score: 0.514

Taguchi A, Fujita J, Namba K, Nishino K

To Be Published

EMD-66536
Download Map
3D View
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with ATP and ADP
CryoEM
Release date: June 3, 2026
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 9x4b
Q-score: 0.558

Taguchi A, Fujita J, Namba K, Nishino K

To Be Published

EMD-66537
Download Map
3D View
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP in peptidisc
CryoEM
Release date: June 3, 2026
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 9x4c
Q-score: 0.535

Taguchi A, Fujita J, Namba K, Nishino K

To Be Published

EMD-66953
Download Map
3D View
Cryo-EM structure of Streptococcus thermophilus FoeAB in complex with AMPPNP
CryoEM
Release date: June 3, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9xka
Q-score: 0.592

Taguchi A, Fujita J, Tanabe M, Takaya D, Harada K, Moriya T, Fukuzawa K, Namba K, Nishino K

To Be Published

EMD-60854
Download Map
3D View
Cryo-EM structure of urease from Ureaplasma parvum
CryoEM
Release date: Aug. 20, 2025
Resolution: 2.03 Å
EM Method: Single-particle
Fitted PDBs: 9it2
Q-score: 0.733

Wu HN, Fujita J, Nakura Y, Inoue M, Suzuki K, Ekimoto T, Yin B, Fukuda Y, Harada K, Inoue T, Ikeguchi M, Namba K, Yanagihara I

J Mol Biol (2025) 437 pp. 169368-169368 [ Pubmed: 40752870 DOI: doi:10.1016/j.jmb.2025.169368 ]

EMD-63050
Download Map
3D View
Cryo-EM structure of linker-extended biparatopic antibody BA1-GP4 in complex with TNFR2
CryoEM
Release date: Aug. 13, 2025
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 9lfl
Q-score: 0.226

Otsuki T, Matsumoto S, Fujita J, Miyata T, Namba K, Kanada R, Okuno Y, Kamada H, Ohno H, Akiba H

J Biol Chem (2025) 301 pp. 110548-110548 [ DOI: doi:10.1016/j.jbc.2025.110548 Pubmed: 40752574 ]

Sort by: Download
Showing 1 - 10 of 49. Page 1 of 5
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [36]
  • EMPIAR [13]

Current status

  • REL [49]

Sample type

  • Complex [36]
  • Protein [36]
  • Ligand [11]

Organism

  • Severe acute respiratory syndrome coronavirus [12]
  • Streptococcus thermophilus [8]
  • Homo sapiens [7]
  • Escherichia coli [6]
  • Mus musculus [5]
  • Vicugna pacos [4]
  • Klebsiella pneumoniae [3]
  • [mycoplasma] mobile [1]
  • Klebsiella pneumoniae [1]
  • Ureaplasma parvum [1]
  • Thermus thermophilus [1]
  • Thermus thermophilus [1]
  • Klebsiella pneumoniae [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [33]
  • Helical reconstruction [3]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [13]
  • ≥ 3Å and < 4Å [20]

Model molecular weight

  • 100-250 kDa [11]
  • 250-500 kDa [3]
  • 1-2 MDa [1]
  • 5-10 MDa [1]

Release Date

  • 2026 [8]
  • 2025 [5]
  • 2023 [21]
  • 2022 [15]

Author by name

  • Fujita J [48]
  • Namba K [48]
  • Inoue T [34]
  • Anzai I [31]
  • Matsuura Y [31]
  • Makino F [29]
  • Kato T [23]
  • Asahara H [21]
  • Kishikawa J [21]
  • Kumano S [21]
  • Moriguchi M [21]
  • Kishikawa JI [11]
  • Nishino K [8]
  • Taguchi A [8]
  • Watanabe T [8]
  • Hibino K [5]
  • Kamimura N [5]
  • Kasai K [5]
  • Kato Y [5]
  • Matsumura H [5]
  • Suzuki K [5]
  • Amesaka H [4]
  • Hara M [4]
  • Imura A [4]
  • Kajita T [4]
  • Kazuma Y [4]
  • Konishi T [4]
  • Konishi Y [4]
  • Kosaka Y [4]
  • Kuroda N [4]
  • Maeda R [4]
  • Miyakawa K [4]
  • Miyamoto Y [4]
  • Miyata T [4]
  • Nagata K [4]
  • Ono C [4]
  • Ryo A [4]
  • Sato K [4]
  • Shichinohe S [4]
  • Shirakawa K [4]
  • Taguwa S [4]
  • Takada K [4]
  • Takaori-kondo A [4]
  • Tanaka SI [4]
  • Torii S [4]
  • Yamaguchi K [4]
  • Yamaoka Y [4]
  • Yamazaki H [4]
  • Yoshizawa T [4]
  • Tsumoto K [3]
  • Akiba H [2]
  • Aoyama H [2]
  • Harada K [2]
  • Imadome K [2]
  • Imadome KI [2]
  • Ishii KJ [2]
  • Ito T [2]
  • Kamada H [2]
  • Kamitani W [2]
  • Kawamoto A [2]
  • Kobiyama K [2]
  • Minamitani T [2]
  • Ohno H [2]
  • Otsubo R [2]
  • Tanaka S [2]
  • Tanino H [2]
  • Toyonaga T [2]
  • Ueno S [2]
  • Yasui T [2]
  • Ekimoto T [1]
  • Fukuda Y [1]
  • Fukuzawa K [1]
  • Hamaguchi T [1]
  • Ikeguchi M [1]
  • Inoue M [1]
  • Ise T [1]
  • Kagoshima G [1]
  • Kanada R [1]
  • Kawakami K [1]
  • Matsumoto S [1]
  • Miyata M [1]
  • Moriya T [1]
  • Nagata S [1]
  • Nakura Y [1]
  • Nishiyama K [1]
  • Okuno Y [1]
  • Otsuki T [1]
  • Takaya D [1]
  • Tanabe M [1]
  • Tobita S [1]
  • Uchihashi T [1]
  • Uehara R [1]
  • Wu HN [1]
  • Yanagihara I [1]
  • Yin B [1]

Author by ORCID

  • Fujita J [33]
  • Anzai I [21]
  • Namba K [20]
  • Kishikawa JI [11]
  • Matsuura Y [8]
  • Makino F [8]
  • Nishino K [7]
  • Taguchi A [7]
  • Inoue T [6]
  • Kasai K [5]
  • Ryo A [4]
  • Takaori-kondo A [4]
  • Yamaoka Y [4]
  • Kazuma Y [4]
  • Maeda R [4]
  • Miyakawa K [4]
  • Yamaguchi K [4]
  • Shirakawa K [4]
  • Yamazaki H [4]
  • Watanabe T [4]
  • Imura A [4]
  • Konishi Y [4]
  • Sato K [4]
  • Matsumura H [3]
  • Aoyama H [2]
  • Akiba H [2]
  • Miyata T [2]
  • Kato T [2]
  • Amesaka H [2]
  • Tanaka SI [2]
  • Tsumoto K [1]
  • Ise T [1]
  • Nagata S [1]
  • Uchihashi T [1]
  • Kawakami K [1]
  • Nishiyama K [1]
  • Kamada H [1]
  • Toyonaga T [1]
  • Ohno H [1]
  • Kawamoto A [1]
  • Fukuda Y [1]
  • Miyata M [1]
  • Harada K [1]
  • Hamaguchi T [1]
  • Tobita S [1]

Journal

  • SCI REP [23]
  • TO BE PUBLISHED [12]
  • COMMUN BIOL [5]
  • NAT COMMUN [5]
  • SCI ADV [2]
  • J BIOL CHEM [1]
  • J MOL BIOL [1]

Software

  • RELION [23]
  • CRYOSPARC [18]

Microscope

  • JEOL CRYO ARM 300 [35]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [36]

Film or detector model

  • GATAN K3 6K X 4K [36]

EMPIAR Experiment type

  • EMDB [13]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [13]

External links

  • PDB [36]
  • AlphaFold DB [34]
  • UniProt [34]
  • PDBe-Kb [26]
  • Complex Portal [16]
  • Gene Ontology [15]
  • EMDB [13]
  • EMPIAR [13]
  • Pfam [13]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [10]
  • InterPro [8]