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author:"Fatma S"

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Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • Protein [4]
  • Cellular component [3]
  • Ligand [3]
  • RNA [3]
  • DNA [1]

Organism

  • Escherichia coli [5]
  • Vibrio cholerae [4]
  • Escherichia coli [1]
  • Capnocytophaga gingivalis [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [4]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 250-500 kDa [1]
  • 2-5 MDa [3]

Release Date

  • 2026 [4]
  • 2025 [2]
  • 2022 [2]

Author by name

  • Fatma S [8]
  • Huang RH [4]
  • Kellogg EH [4]
  • Li Q [4]
  • Miller DJ [4]
  • Tian Y [4]
  • Truong VH [4]
  • Zeng F [4]
  • Carruthers A [2]
  • Jiang J [2]
  • Jin H [2]
  • Raybarman A [2]

Author by ORCID

  • Fatma S [6]
  • Miller DJ [4]
  • Truong VH [4]
  • Kellogg EH [4]
  • Carruthers A [2]
  • Tian Y [2]
  • Huang RH [2]
  • Raybarman A [2]

Journal

  • TO BE PUBLISHED [4]
  • BIORXIV [2]
  • PNAS [2]

Software

  • CRYOSPARC [6]
  • CTFFIND [4]
  • RELION [2]

Microscope

  • FEI TALOS ARCTICA [4]
  • FEI TITAN KRIOS [2]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON III 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]

External links

  • AlphaFold DB [4]
  • PDB [4]
  • Pfam [4]
  • UniProt [4]
  • ChEBI [3]
  • ChEMBL [3]
  • DrugBank [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDBe-Kb [3]
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Showing 1 - 8 of 8. Page 1 of 1
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EMD-72640
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Consensus map of the IF-3a transposase complex with synaptic ends
Consensus map
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.9 Å
EM Method: Single-particle

Truong VH, Fatma S, Miller DJ, Kellogg EH

To Be Published

EMD-72641
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3D View
Focused refinement map of IHF region of IF3-a transposase complex with synapsed ends
CryoEM
Focused map
Release date: Sept. 2, 2026
Resolution: 4.18 Å
EM Method: Single-particle

Truong VH, Fatma S, Miller DJ, Kellogg EH

To Be Published

EMD-72647
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3D View
Focused refinement map of distal right end DNA region within IF3A transposase complex with synapsed ends
Focused map
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.94 Å
EM Method: Single-particle

Truong VH, Fatma S, Miller DJ, Kellogg EH

To Be Published

EMD-72650
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3D View
Composite map of IF-3a transposase complex with paired transposon ends
Composite map
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9y7b
Q-score: 0.293
Similar entry percentile: 18%

Truong VH, Fatma S, Miller DJ, Kellogg EH

To Be Published

EMD-48479
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Damaged 70S ribosome with PrfH bound
CryoEM
Release date: Feb. 5, 2025
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 9mor
Q-score: 0.367
Similar entry percentile: 5%

Tian Y, Li Q, Fatma S, Jiang J, Jin H, Zeng F, Huang RH

bioRxiv (2025) [ Pubmed: 39829893 DOI: doi:10.1101/2025.01.09.632186 ]

EMD-48513
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Damaged 70S ribosome with PrfH bound
CryoEM
Release date: Feb. 5, 2025
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 9mq4
Q-score: 0.462
Similar entry percentile: 24%

Tian Y, Li Q, Fatma S, Jiang J, Jin H, Zeng F, Huang RH

bioRxiv (2025) [ Pubmed: 39829893 DOI: doi:10.1101/2025.01.09.632186 ]

EMD-24944
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3D View
Damaged 70S ribosome with PrfH bound
CryoEM
Release date: Aug. 3, 2022
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 7sa4
Q-score: 0.61
Similar entry percentile: 83%

Tian Y, Zeng F, Raybarman A, Fatma S, Carruthers A, Li Q, Huang RH

PNAS (2022) 119 pp. e2202464119-e2202464119 [ DOI: doi:10.1073/pnas.2202464119 Pubmed: 35858322 ]

EMD-24945
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3D View
Intact 70S ribosome without PrfH bound
CryoEM
Release date: Aug. 3, 2022
Resolution: 3.3 Å
EM Method: Single-particle

Tian Y, Zeng F, Raybarman A, Fatma S, Carruthers A, Li Q, Huang RH

PNAS (2022) 119 pp. e2202464119-e2202464119 [ DOI: doi:10.1073/pnas.2202464119 Pubmed: 35858322 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • Protein [4]
  • Cellular component [3]
  • Ligand [3]
  • RNA [3]
  • DNA [1]

Organism

  • Escherichia coli [5]
  • Vibrio cholerae [4]
  • Escherichia coli [1]
  • Capnocytophaga gingivalis [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [4]
  • ≥ 4Å and < 5Å [1]

Model molecular weight

  • 250-500 kDa [1]
  • 2-5 MDa [3]

Release Date

  • 2026 [4]
  • 2025 [2]
  • 2022 [2]

Author by name

  • Fatma S [8]
  • Huang RH [4]
  • Kellogg EH [4]
  • Li Q [4]
  • Miller DJ [4]
  • Tian Y [4]
  • Truong VH [4]
  • Zeng F [4]
  • Carruthers A [2]
  • Jiang J [2]
  • Jin H [2]
  • Raybarman A [2]

Author by ORCID

  • Fatma S [6]
  • Miller DJ [4]
  • Truong VH [4]
  • Kellogg EH [4]
  • Carruthers A [2]
  • Tian Y [2]
  • Huang RH [2]
  • Raybarman A [2]

Journal

  • TO BE PUBLISHED [4]
  • BIORXIV [2]
  • PNAS [2]

Software

  • CRYOSPARC [6]
  • CTFFIND [4]
  • RELION [2]

Microscope

  • FEI TALOS ARCTICA [4]
  • FEI TITAN KRIOS [2]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • FEI FALCON III 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]

External links

  • AlphaFold DB [4]
  • PDB [4]
  • Pfam [4]
  • UniProt [4]
  • ChEBI [3]
  • ChEMBL [3]
  • DrugBank [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDBe-Kb [3]