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author:"Farrell DP"

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Current Database

  • EMDB [29]
  • EMPIAR [2]

Current status

  • REL [31]

Sample type

  • Complex [29]
  • Protein [19]
  • Ligand [13]
  • DNA [1]

Organism

  • Saccharomyces cerevisiae [11]
  • Homo sapiens [7]
  • Acinetobacter baumannii [4]
  • Sus scrofa [4]
  • Campylobacter jejuni [2]
  • Bos taurus [2]
  • Staphylococcus aureus [1]
  • Synthetic construct [1]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [24]
  • Helical reconstruction [5]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [6]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [7]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [2]
  • 500-1000 kDa [6]
  • 1-2 MDa [4]

Release Date

  • 2022 [6]
  • 2021 [15]
  • 2020 [8]
  • 2019 [2]

Author by name

  • Dimaio F [29]
  • Farrell DP [29]
  • Kollman JM [12]
  • Hansen JM [11]
  • Lynch EM [11]
  • Horowitz A [10]
  • Quispe J [10]
  • Bergeron JRC [7]
  • Walz T [7]
  • Tzokov SB [6]
  • Kadoch C [5]
  • Luo J [5]
  • Mann D [5]
  • Mashtalir N [5]
  • Suzuki H [5]
  • Costa K [4]
  • D Avino Ar [4]
  • Eshun-wilson L [4]
  • Fan J [4]
  • Fang Q [4]
  • Fernandes J [4]
  • Ferro LS [4]
  • Filipovski M [4]
  • Golcuk M [4]
  • Gur M [4]
  • Han Y [4]
  • He Y [4]
  • Huijben T [4]
  • Jack A [4]
  • Khalid S [4]
  • Miller SI [4]
  • Muenks A [4]
  • Nogales E [4]
  • Onikubo T [4]
  • Ranish JA [4]
  • Roeder RG [4]
  • Sankar A [4]
  • Somboon K [4]
  • St Pierre R [4]
  • Valencia AM [4]
  • Yildiz A [4]
  • Al-otaibi NS [2]
  • Apelt L [2]
  • Chou H [2]
  • Chou HT [2]
  • Dollfus H [2]
  • Goldstein JS [2]
  • Kelly DJ [2]
  • Li Z [2]
  • Muller J [2]
  • Nachury MV [2]
  • Nachury NV [2]
  • Nager AR [2]
  • Nudler E [2]
  • Stelzl U [2]
  • Svetlov V [2]
  • Taylor AJ [2]
  • White SR [2]
  • Woodsmith J [2]
  • Abrahams JP [1]
  • Blum TB [1]
  • Brzovic PS [1]
  • Burrell AL [1]
  • Chatterjee C [1]
  • Dimaio F [1]
  • Dosey AM [1]
  • Farrell D [1]
  • Garner EC [1]
  • Kang J [1]
  • Klevit RE [1]
  • Murray AW [1]
  • Pravat A [1]
  • Stewart MD [1]
  • Stoddard PR [1]
  • Tuttle LM [1]
  • Wang M [1]
  • Williams TA [1]
  • Witus SR [1]
  • Wu J [1]
  • Zhao W [1]

Author by ORCID

  • Farrell DP [19]
  • Kollman JM [12]
  • Lynch EM [11]
  • Hansen JM [11]
  • Dimaio F [11]
  • Quispe J [10]
  • Tzokov SB [6]
  • Bergeron JRC [6]
  • Walz T [6]
  • Ferro LS [4]
  • Suzuki H [4]
  • Golcuk M [4]
  • Eshun-wilson L [4]
  • Jack A [4]
  • Nogales E [4]
  • Fernandes J [4]
  • Huijben T [4]
  • Mann D [4]
  • Gur M [4]
  • Miller SI [4]
  • Fang Q [4]
  • Valencia AM [4]
  • Luo J [4]
  • Yildiz A [4]
  • Kelly DJ [2]
  • Al-otaibi NS [2]
  • Dollfus H [2]
  • Muller J [2]
  • Nudler E [2]
  • Taylor AJ [2]
  • Stelzl U [2]
  • Nachury MV [2]
  • Chatterjee C [1]
  • Dosey AM [1]
  • Tuttle LM [1]
  • Brzovic PS [1]
  • Stewart MD [1]
  • Murray AW [1]
  • Blum TB [1]
  • Klevit RE [1]
  • Luo J [1]
  • Garner EC [1]
  • Williams TA [1]
  • Witus SR [1]
  • Wu J [1]
  • Stoddard PR [1]

Journal

  • ELIFE [10]
  • CELL [5]
  • COMMUN BIOL [5]
  • SCIENCE [5]
  • BIORXIV [3]
  • NAT COMMUN [2]
  • STRUCTURE [2]
  • ANGEW CHEM INT ED ENGL [1]
  • NAT STRUCT MOL BIOL [1]

Software

  • RELION [10]
  • CTFFIND [6]
  • CRYOSPARC [2]

Microscope

  • FEI TITAN KRIOS [19]
  • FEI TALOS ARCTICA [7]
  • FEI POLARA 300 [2]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [29]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [23]
  • GATAN K3 6K X 4K [4]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - SINGLE FRAME [2]

External links

  • UniProt [18]
  • PDB [16]
  • ChEBI [13]
  • ChEMBL [13]
  • DrugBank [13]
  • AlphaFold DB [8]
  • PDBe-Kb [8]
  • Gene Ontology [5]
  • InterPro [5]
  • Pfam [5]
  • EMDB [2]
  • EMPIAR [2]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 31. Page 1 of 4
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EMD-14398
Download Map
3D View
Cryo-EM structure of the A. baumannii MlaBDEF complex bound to APPNHP
Release date: Oct. 5, 2022
Resolution: 3.9 Å
EM Method: Single-particle

Mann D, Fan J, Somboon K, Farrell DP, Muenks A, Tzokov SB, DiMaio F, Khalid S, Miller SI, Bergeron JRC

Commun Biol (2021) 4 pp. 817-817 [ Pubmed: 34188171 DOI: doi:10.1038/s42003-021-02318-4 ]

EMD-25117
Download Map
3D View
Cryo-EM reconstruction of MAP7 83-134, bound to the microtubule
Release date: May 18, 2022
Resolution: 3.7 Å
EM Method: Helical reconstruction

Ferro LS, Fang Q, Eshun-Wilson L, Fernandes J, Jack A, Farrell DP, Golcuk M, Huijben T, Costa K, Gur M, DiMaio F, Nogales E, Yildiz A

Science (2022) 375 pp. 326-331 [ DOI: doi:10.1126/science.abf6154 Pubmed: 35050657 ]

EMD-25118
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3D View
Cryo-EM reconstruction of Kinesin-1 and MAP7, bound to the microtubule
Release date: May 18, 2022
Resolution: 4.2 Å
EM Method: Helical reconstruction

Ferro LS, Fang Q, Eshun-Wilson L, Fernandes J, Jack A, Farrell DP, Golcuk M, Huijben T, Costa K, Gur M, DiMaio F, Nogales E, Yildiz A

Science (2022) 375 pp. 326-331 [ DOI: doi:10.1126/science.abf6154 Pubmed: 35050657 ]

EMD-25119
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3D View
Cryo-EM structure of MAP7 MTBD and microtubule-associated protein tau, bound to the microtubule
Release date: May 18, 2022
Resolution: 4.0 Å
EM Method: Helical reconstruction

Ferro LS, Fang Q, Eshun-Wilson L, Fernandes J, Jack A, Farrell DP, Golcuk M, Huijben T, Costa K, Gur M, DiMaio F, Nogales E, Yildiz A

Science (2022) 375 pp. 326-331 [ DOI: doi:10.1126/science.abf6154 Pubmed: 35050657 ]

EMD-25120
Download Map
3D View
Cryo-EM structure of full-length MAP7 bound to the microtubule
Release date: May 18, 2022
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7sgs
Q-score: 0.5

Ferro LS, Fang Q, Eshun-Wilson L, Fernandes J, Jack A, Farrell DP, Golcuk M, Huijben T, Costa K, Gur M, DiMaio F, Nogales E, Yildiz A

Science (2022) 375 pp. 326-331 [ DOI: doi:10.1126/science.abf6154 Pubmed: 35050657 ]

EMPIAR-10425
Related EMDB
EMD-11082
Cryo-EM structure of the A.baumannii MlaBDEF complex bound to AppNHp
Release date: Jan. 18, 2022
Dataset size: 135.6 GB
Experiment type: EMDB

Mann D, Fan J, Somboon K, Farrell DP, Muenks A, Tzokov SB, DiMaio F, Khalid S, Miller SI, Bergeron JRC

Commun Biol (2021) 4 [ Pubmed: 34188171 DOI: 10.1038/s42003-021-02318-4 ]

Image sets:
  • MotionCor2 aligned micrographs
EMD-24497
Download Map
3D View
Yeast CTP Synthase URA8 tetramer bound to ATP/UTP at neutral pH
Release date: Nov. 24, 2021
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7rkh
Q-score: 0.535

Hansen JM, Horowitz A, Lynch EM, Farrell DP, Quispe J, DiMaio F, Kollman JM

eLife (2021) 10 [ DOI: doi:10.7554/eLife.73368 Pubmed: 34734801 ]

EMD-24512
Download Map
3D View
Yeast CTP Synthase URA8 Filament bound to ATP/UTP at low pH
Release date: Nov. 24, 2021
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7rl0
Q-score: 0.312

Hansen JM, Horowitz A, Lynch EM, Farrell DP, Quispe J, DiMaio F, Kollman JM

eLife (2021) 10 [ DOI: doi:10.7554/eLife.73368 Pubmed: 34734801 ]

EMD-24516
Download Map
3D View
Yeast CTP Synthase URA8 Filament bound to CTP at low pH
Release date: Nov. 24, 2021
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7rl5
Q-score: 0.247

Hansen JM, Horowitz A, Lynch EM, Farrell DP, Quispe J, DiMaio F, Kollman JM

eLife (2021) 10 [ DOI: doi:10.7554/eLife.73368 Pubmed: 34734801 ]

EMD-24560
Download Map
3D View
Yeast CTP Synthase Ura7 filament bound to CTP at low pH
Release date: Nov. 24, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7rmc
Q-score: 0.18

Hansen JM, Horowitz A, Lynch EM, Farrell DP, Quispe J, DiMaio F, Kollman JM

eLife (2021) 10 [ DOI: doi:10.7554/eLife.73368 Pubmed: 34734801 ]

Sort by: Download
Showing 1 - 10 of 31. Page 1 of 4
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [29]
  • EMPIAR [2]

Current status

  • REL [31]

Sample type

  • Complex [29]
  • Protein [19]
  • Ligand [13]
  • DNA [1]

Organism

  • Saccharomyces cerevisiae [11]
  • Homo sapiens [7]
  • Acinetobacter baumannii [4]
  • Sus scrofa [4]
  • Campylobacter jejuni [2]
  • Bos taurus [2]
  • Staphylococcus aureus [1]
  • Synthetic construct [1]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [24]
  • Helical reconstruction [5]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [6]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [7]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [2]
  • 500-1000 kDa [6]
  • 1-2 MDa [4]

Release Date

  • 2022 [6]
  • 2021 [15]
  • 2020 [8]
  • 2019 [2]

Author by name

  • Dimaio F [29]
  • Farrell DP [29]
  • Kollman JM [12]
  • Hansen JM [11]
  • Lynch EM [11]
  • Horowitz A [10]
  • Quispe J [10]
  • Bergeron JRC [7]
  • Walz T [7]
  • Tzokov SB [6]
  • Kadoch C [5]
  • Luo J [5]
  • Mann D [5]
  • Mashtalir N [5]
  • Suzuki H [5]
  • Costa K [4]
  • D Avino Ar [4]
  • Eshun-wilson L [4]
  • Fan J [4]
  • Fang Q [4]
  • Fernandes J [4]
  • Ferro LS [4]
  • Filipovski M [4]
  • Golcuk M [4]
  • Gur M [4]
  • Han Y [4]
  • He Y [4]
  • Huijben T [4]
  • Jack A [4]
  • Khalid S [4]
  • Miller SI [4]
  • Muenks A [4]
  • Nogales E [4]
  • Onikubo T [4]
  • Ranish JA [4]
  • Roeder RG [4]
  • Sankar A [4]
  • Somboon K [4]
  • St Pierre R [4]
  • Valencia AM [4]
  • Yildiz A [4]
  • Al-otaibi NS [2]
  • Apelt L [2]
  • Chou H [2]
  • Chou HT [2]
  • Dollfus H [2]
  • Goldstein JS [2]
  • Kelly DJ [2]
  • Li Z [2]
  • Muller J [2]
  • Nachury MV [2]
  • Nachury NV [2]
  • Nager AR [2]
  • Nudler E [2]
  • Stelzl U [2]
  • Svetlov V [2]
  • Taylor AJ [2]
  • White SR [2]
  • Woodsmith J [2]
  • Abrahams JP [1]
  • Blum TB [1]
  • Brzovic PS [1]
  • Burrell AL [1]
  • Chatterjee C [1]
  • Dimaio F [1]
  • Dosey AM [1]
  • Farrell D [1]
  • Garner EC [1]
  • Kang J [1]
  • Klevit RE [1]
  • Murray AW [1]
  • Pravat A [1]
  • Stewart MD [1]
  • Stoddard PR [1]
  • Tuttle LM [1]
  • Wang M [1]
  • Williams TA [1]
  • Witus SR [1]
  • Wu J [1]
  • Zhao W [1]

Author by ORCID

  • Farrell DP [19]
  • Kollman JM [12]
  • Lynch EM [11]
  • Hansen JM [11]
  • Dimaio F [11]
  • Quispe J [10]
  • Tzokov SB [6]
  • Bergeron JRC [6]
  • Walz T [6]
  • Ferro LS [4]
  • Suzuki H [4]
  • Golcuk M [4]
  • Eshun-wilson L [4]
  • Jack A [4]
  • Nogales E [4]
  • Fernandes J [4]
  • Huijben T [4]
  • Mann D [4]
  • Gur M [4]
  • Miller SI [4]
  • Fang Q [4]
  • Valencia AM [4]
  • Luo J [4]
  • Yildiz A [4]
  • Kelly DJ [2]
  • Al-otaibi NS [2]
  • Dollfus H [2]
  • Muller J [2]
  • Nudler E [2]
  • Taylor AJ [2]
  • Stelzl U [2]
  • Nachury MV [2]
  • Chatterjee C [1]
  • Dosey AM [1]
  • Tuttle LM [1]
  • Brzovic PS [1]
  • Stewart MD [1]
  • Murray AW [1]
  • Blum TB [1]
  • Klevit RE [1]
  • Luo J [1]
  • Garner EC [1]
  • Williams TA [1]
  • Witus SR [1]
  • Wu J [1]
  • Stoddard PR [1]

Journal

  • ELIFE [10]
  • CELL [5]
  • COMMUN BIOL [5]
  • SCIENCE [5]
  • BIORXIV [3]
  • NAT COMMUN [2]
  • STRUCTURE [2]
  • ANGEW CHEM INT ED ENGL [1]
  • NAT STRUCT MOL BIOL [1]

Software

  • RELION [10]
  • CTFFIND [6]
  • CRYOSPARC [2]

Microscope

  • FEI TITAN KRIOS [19]
  • FEI TALOS ARCTICA [7]
  • FEI POLARA 300 [2]
  • FEI TECNAI ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [29]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [23]
  • GATAN K3 6K X 4K [4]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - SINGLE FRAME [2]

External links

  • UniProt [18]
  • PDB [16]
  • ChEBI [13]
  • ChEMBL [13]
  • DrugBank [13]
  • AlphaFold DB [8]
  • PDBe-Kb [8]
  • Gene Ontology [5]
  • InterPro [5]
  • Pfam [5]
  • EMDB [2]
  • EMPIAR [2]
  • SCOP2 [1]