Electron Microscopy Data Bank

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author:"Cheng Y"

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Current Database

Current status

Sample type

Organism

Homo sapiens [150]
Saccharomyces cerevisiae [62]
Rattus norvegicus [53]
Mus musculus [28]
Xenopus laevis [26]
Synthetic construct [23]
Sus scrofa [19]
Parus major [18]
Thermoplasma acidophilum [16]
Severe acute respiratory syndrome coronavirus [16]
Monkeypox virus [9]
Bos taurus [9]
Human immunodeficiency virus 1 [8]
Lama glama [8]
Cricetulus griseus [7]
Cyriopagopus schmidti [5]
Saccharomyces cerevisiae [5]
Arabidopsis thaliana [4]
Oryctolagus cuniculus [4]
(no species) [3]
Streptococcus agalactiae [3]
Bacillus amyloliquefaciens [3]
Thermus thermophilus [3]
African swine fever virus [3]
Trypanosoma brucei [3]
Spodoptera frugiperda [3]
Danio rerio [3]
Pseudomonas phage phipa3 [3]
African swine fever virus [2]
Enterococcus faecalis [2]
Aspergillus fischeri [2]
Glycine max [2]
Zea mays [2]
Enterococcus faecalis [2]
Escherichia coli [2]
(no species) [2]
Fusobacterium nucleatum [2]
Human immunodeficiency virus 2 [1]
Streptococcus pyogenes [1]
Ligilactobacillus salivarius [1]
Pyrococcus abyssi [1]
Mycetohabitans rhizoxinica [1]
Clostridium botulinum [1]
Influenza a virus [1]
Escherichia coli [1]
Shewanella oneidensis [1]
Drosophila melanogaster [1]
(no species) [1]
Bos indicus [1]
Ovis aries [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Cheng Y [433]
Julius D [95]
Wang Y [55]
Wu H [45]
Zhang K [41]
Wu S [39]
Narlikar GJ [38]
Yu Z [36]
Armache JP [35]
Manglik A [35]
Li X [34]
Chen Y [33]
Liao M [32]
Cheng YF [31]
Asarnow D [30]
Lin X [30]
Zhao J [30]
Frost A [28]
Bhabha G [27]
Campbell MG [27]
Cheng HC [27]
Moeller A [27]
Speir JA [27]
Vale RD [27]
Zhang N [27]
Chio US [24]
Choi W [24]
Faust B [23]
Wang F [22]
Agard DA [21]
Choi KY [21]
Li C [21]
Craik CS [19]
Feng S [19]
Nishimura SL [19]
Baron JL [18]
Cormier A [18]
Ito S [18]
Lou J [18]
Seed RI [18]
Wang L [18]
Zhang Y [18]
Huang B [17]
Li J [17]
Munoz EN [17]
Stroud RM [17]
Dang S [16]
Dror RO [16]
Wang H [16]
Hoppe N [15]
Liu Y [15]
Moss 3Rd Fr [15]
Arnold WR [14]
Avila Ibarra A [14]
Baker M [14]
Cameron AD [14]
Coffino P [14]
Gao GF [14]
Guo Y [14]
Halebian M [14]
Jan LY [14]
Jones JR [14]
Liu R [14]
Mancino A [14]
Morris KL [14]
Qi J [14]
Sessions RB [14]
Smith CJ [14]
Suomivuori CM [14]
Zhang H [14]
Billesbolle CB [13]
Cheng T [13]
Jan YN [13]
Qin Y [13]
Wang Q [13]
Armache J-P [12]
Bulkley D [12]
Jin M [12]
Li S [12]
Park J [12]
Zhang D [12]
Brandman O [11]
Cox J [11]
Diedrich JK [11]
Kaur U [11]
Lambowitz AM [11]
Larson M [11]
Makhija S [11]
Muftuoglu Y [11]
Muralidharan M [11]
Narlikar G [11]
Parsawar K [11]
Pinto AFM [11]
Saghatelian A [11]
Shen PS [11]
Singh I [11]
Szkudlinski MW [11]
Weissman JS [11]
Yu Y [11]
Zhou C [11]

Author by ORCID

Cheng Y [312]
Julius D [48]
Narlikar GJ [35]
Armache JP [31]
Zhang K [30]
Wang Y [29]
Yu Z [27]
Moeller A [27]
Choi W [24]
Wu H [24]
Chio US [23]
Frost A [23]
Faust B [20]
Manglik A [20]
Lou J [18]
Baron JL [18]
Chen Y [18]
Huang B [17]
Dror RO [16]
Moss 3Rd Fr [15]
Campbell MG [15]
Agard DA [15]
Wang F [14]
Suomivuori CM [14]
Gao GF [14]
Mancino A [14]
Wang H [14]
Arnold WR [14]
Billesbolle CB [13]
Nishimura SL [12]
Jin M [12]
Zhang H [11]
Cameron AD [11]
Halebian M [11]
Pinto AFM [11]
Morris KL [11]
Kaur U [11]
Cormier A [11]
Szkudlinski MW [11]
Jones JR [11]
Sessions RB [11]
Smith CJ [11]
Sun S [10]
Gong T [10]
Gourdet MA [10]
Ying B [10]
Wu H [10]
Dang S [10]
Shao B [10]
Huang D [10]
Jia X [10]
Zheng X [10]
Liu J [10]
Xie J [10]
Xu S [10]
Seed RI [10]
Hsieh LJ [10]
Cheng Y [10]
Su Z [10]
Zhou X [10]
Wang L [10]
Ma H [10]
Luo Y [10]
Munoz EN [10]
Zhang C [10]
Peng X [10]
Zhang D [10]
Liu Y [10]
Shang S [10]
Tu Y [10]
Zou J [10]
Huang Z [10]
Wei Y [10]
Shi Y [9]
Xiong X [9]
Shen PS [9]
Larson MH [9]
Qi J [9]
Weissman JS [9]
Miao K [9]
Zhao J [8]
Battaile KP [8]
Roelofs J [8]
Brunger AT [7]
Lin King Jv [7]
Zhao M [7]
Gilbert LA [7]
Asarnow D [7]
Winters A [7]
Zhou SK [7]
Gupta M [7]
Goodarzi H [7]
Yu J [7]
Navickas A [7]
Sali A [7]
Gao Y [7]
Zhou Q [7]
Stroud RM [7]
Vivona S [7]
Autzen H [7]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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EMDB [411]
EMPIAR [26]

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EMD-72658

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HCMV Protease in complex with Fab5 - Class 1

CryoEM

Release date: May 27, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9y7l
Q-score: 0.539

Zimanyi M, Hulce KR, Bohn MF, Norman J, Rohweder PJ, Cheng Y, Craik C

To Be Published

EMD-72659

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HCMV Protease in complex with Fab5 - Class 2

CryoEM

Release date: May 27, 2026
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 9y7m
Q-score: 0.514

Zimanyi M, Hulce KR, Bohn MF, Norman J, Rohweder PJ, Cheng Y, Craik C

To Be Published

EMD-72660

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HCMV Protease in complex with Fab5 - Class 3

CryoEM

Release date: May 27, 2026
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 9y7n
Q-score: 0.549

Zimanyi M, Hulce KR, Bohn MF, Norman J, Rohweder PJ, Cheng Y, Craik C

To Be Published

EMD-66135

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The cryo-EM structure of Zea mays GLN1

CryoEM

Release date: April 29, 2026
Resolution: 1.98 Å
EM Method: Single-particle
Fitted PDBs: 9wp6
Q-score: 0.61

Chen D, Gao L, Li S, Cheng Y, Wu X, Li W, Zhang J, Fu X, Xiang P, Sun L, Chen Z, Zhang H, Li Y, Luo S, You C, Sun L, Huang X, Zhu Y, Zeng X, Wang W, He Y, Wang H, Zhang Y, Chen X, Wu Y, Huang Y

Nature (2026) [ DOI: doi:10.1038/s41586-026-10610-8 Pubmed: 42236940 ]

EMD-70347

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Low resolution single particle cryo-EM reconstruction of the HIV-1 Rev/RRE 355 nt

CryoEM

Release date: April 15, 2026
Resolution: 10.03 Å
EM Method: Single-particle

Smith AM, Li Y, Velarde A, Cheng Y, Frankel AD

Mol Cell (2025) 85 pp. 3108-3122.e7 [ Pubmed: 40845804 DOI: doi:10.1016/j.molcel.2025.07.015 ]

EMD-71394

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Avian TRPM8 Parus major desensitized, fully-swapped, ligand-free structure resolved in cell vesicles using cryo-EM

CryoEM

Release date: April 8, 2026
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9p90
Q-score: 0.455

Choi KY, Lin X, Cheng Y, Julius D

Nature (2026) 653 pp. 962-970 [ Pubmed: 41882351 DOI: doi:10.1038/s41586-026-10276-2 ]

EMD-71455

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Avian TRPM8 Parus major menthol bound structure resolved in cell vesicles using cryo-EM

CryoEM

Release date: April 8, 2026
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9pb6
Q-score: 0.436

Choi KY, Lin X, Cheng Y, Julius D

Nature (2026) 653 pp. 962-970 [ Pubmed: 41882351 DOI: doi:10.1038/s41586-026-10276-2 ]

EMD-74123

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Avian TRPM8 Parus major semi-swapped, calcium free, menthol bound structure resolved in cell vesicles

CryoEM

Release date: April 8, 2026
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 9zez
Q-score: 0.444

Choi KY, Lin X, Cheng Y, Julius D

Nature (2026) 653 pp. 962-970 [ Pubmed: 41882351 DOI: doi:10.1038/s41586-026-10276-2 ]

EMD-74125

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Parus major TRPM8, fully-swapped state determined in the presence of menthol

CryoEM

Release date: April 8, 2026
Resolution: 3.9 Å
EM Method: Single-particle

Choi KY, Lin X, Cheng Y, Julius D

Nature (2026) 653 pp. 962-970 [ Pubmed: 41882351 DOI: doi:10.1038/s41586-026-10276-2 ]

EMD-74126

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3D View

Avian TRPM8 Parus major undetermined class 1 resolved in cell vesicles using cryo-EM

CryoEM

Release date: April 8, 2026
Resolution: 3.85 Å
EM Method: Single-particle

Choi KY, Lin X, Cheng Y, Julius D

Nature (2026) 653 pp. 962-970 [ Pubmed: 41882351 DOI: doi:10.1038/s41586-026-10276-2 ]

Sort by: Download

Showing 1 - 10 of 437. Page 1 of 44

Display:

Statistics

Download

Select database:

EMDB [411]
EMPIAR [26]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [150]
Saccharomyces cerevisiae [62]
Rattus norvegicus [53]
Mus musculus [28]
Xenopus laevis [26]
Synthetic construct [23]
Sus scrofa [19]
Parus major [18]
Thermoplasma acidophilum [16]
Severe acute respiratory syndrome coronavirus [16]
Monkeypox virus [9]
Bos taurus [9]
Human immunodeficiency virus 1 [8]
Lama glama [8]
Cricetulus griseus [7]
Cyriopagopus schmidti [5]
Saccharomyces cerevisiae [5]
Arabidopsis thaliana [4]
Oryctolagus cuniculus [4]
(no species) [3]
Streptococcus agalactiae [3]
Bacillus amyloliquefaciens [3]
Thermus thermophilus [3]
African swine fever virus [3]
Trypanosoma brucei [3]
Spodoptera frugiperda [3]
Danio rerio [3]
Pseudomonas phage phipa3 [3]
African swine fever virus [2]
Enterococcus faecalis [2]
Aspergillus fischeri [2]
Glycine max [2]
Zea mays [2]
Enterococcus faecalis [2]
Escherichia coli [2]
(no species) [2]
Fusobacterium nucleatum [2]
Human immunodeficiency virus 2 [1]
Streptococcus pyogenes [1]
Ligilactobacillus salivarius [1]
Pyrococcus abyssi [1]
Mycetohabitans rhizoxinica [1]
Clostridium botulinum [1]
Influenza a virus [1]
Escherichia coli [1]
Shewanella oneidensis [1]
Drosophila melanogaster [1]
(no species) [1]
Bos indicus [1]
Ovis aries [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Cheng Y [433]
Julius D [95]
Wang Y [55]
Wu H [45]
Zhang K [41]
Wu S [39]
Narlikar GJ [38]
Yu Z [36]
Armache JP [35]
Manglik A [35]
Li X [34]
Chen Y [33]
Liao M [32]
Cheng YF [31]
Asarnow D [30]
Lin X [30]
Zhao J [30]
Frost A [28]
Bhabha G [27]
Campbell MG [27]
Cheng HC [27]
Moeller A [27]
Speir JA [27]
Vale RD [27]
Zhang N [27]
Chio US [24]
Choi W [24]
Faust B [23]
Wang F [22]
Agard DA [21]
Choi KY [21]
Li C [21]
Craik CS [19]
Feng S [19]
Nishimura SL [19]
Baron JL [18]
Cormier A [18]
Ito S [18]
Lou J [18]
Seed RI [18]
Wang L [18]
Zhang Y [18]
Huang B [17]
Li J [17]
Munoz EN [17]
Stroud RM [17]
Dang S [16]
Dror RO [16]
Wang H [16]
Hoppe N [15]
Liu Y [15]
Moss 3Rd Fr [15]
Arnold WR [14]
Avila Ibarra A [14]
Baker M [14]
Cameron AD [14]
Coffino P [14]
Gao GF [14]
Guo Y [14]
Halebian M [14]
Jan LY [14]
Jones JR [14]
Liu R [14]
Mancino A [14]
Morris KL [14]
Qi J [14]
Sessions RB [14]
Smith CJ [14]
Suomivuori CM [14]
Zhang H [14]
Billesbolle CB [13]
Cheng T [13]
Jan YN [13]
Qin Y [13]
Wang Q [13]
Armache J-P [12]
Bulkley D [12]
Jin M [12]
Li S [12]
Park J [12]
Zhang D [12]
Brandman O [11]
Cox J [11]
Diedrich JK [11]
Kaur U [11]
Lambowitz AM [11]
Larson M [11]
Makhija S [11]
Muftuoglu Y [11]
Muralidharan M [11]
Narlikar G [11]
Parsawar K [11]
Pinto AFM [11]
Saghatelian A [11]
Shen PS [11]
Singh I [11]
Szkudlinski MW [11]
Weissman JS [11]
Yu Y [11]
Zhou C [11]

Author by ORCID

Cheng Y [312]
Julius D [48]
Narlikar GJ [35]
Armache JP [31]
Zhang K [30]
Wang Y [29]
Yu Z [27]
Moeller A [27]
Choi W [24]
Wu H [24]
Chio US [23]
Frost A [23]
Faust B [20]
Manglik A [20]
Lou J [18]
Baron JL [18]
Chen Y [18]
Huang B [17]
Dror RO [16]
Moss 3Rd Fr [15]
Campbell MG [15]
Agard DA [15]
Wang F [14]
Suomivuori CM [14]
Gao GF [14]
Mancino A [14]
Wang H [14]
Arnold WR [14]
Billesbolle CB [13]
Nishimura SL [12]
Jin M [12]
Zhang H [11]
Cameron AD [11]
Halebian M [11]
Pinto AFM [11]
Morris KL [11]
Kaur U [11]
Cormier A [11]
Szkudlinski MW [11]
Jones JR [11]
Sessions RB [11]
Smith CJ [11]
Sun S [10]
Gong T [10]
Gourdet MA [10]
Ying B [10]
Wu H [10]
Dang S [10]
Shao B [10]
Huang D [10]
Jia X [10]
Zheng X [10]
Liu J [10]
Xie J [10]
Xu S [10]
Seed RI [10]
Hsieh LJ [10]
Cheng Y [10]
Su Z [10]
Zhou X [10]
Wang L [10]
Ma H [10]
Luo Y [10]
Munoz EN [10]
Zhang C [10]
Peng X [10]
Zhang D [10]
Liu Y [10]
Shang S [10]
Tu Y [10]
Zou J [10]
Huang Z [10]
Wei Y [10]
Shi Y [9]
Xiong X [9]
Shen PS [9]
Larson MH [9]
Qi J [9]
Weissman JS [9]
Miao K [9]
Zhao J [8]
Battaile KP [8]
Roelofs J [8]
Brunger AT [7]
Lin King Jv [7]
Zhao M [7]
Gilbert LA [7]
Asarnow D [7]
Winters A [7]
Zhou SK [7]
Gupta M [7]
Goodarzi H [7]
Yu J [7]
Navickas A [7]
Sali A [7]
Gao Y [7]
Zhou Q [7]
Stroud RM [7]
Vivona S [7]
Autzen H [7]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links