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author:"Cate JHD"

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Current Database

  • EMDB [72]

Current status

  • REL [72]

Sample type

  • Complex [71]
  • RNA [21]
  • Protein [19]
  • Ligand [14]
  • DNA [2]
  • Cellular component [1]
  • Sample [1]

Organism

  • Escherichia coli [32]
  • Methanosarcina acetivorans [14]
  • Pyrobaculum calidifontis [12]
  • Homo sapiens [12]
  • Candidatus methanomethylophilus alvus [2]
  • Deinococcus radiodurans [2]
  • Synthetic construct [2]
  • Rhizobium sp. pop5 [1]

EM Method

  • Single-particle [72]

Resolution

  • < 2Å [8]
  • ≥ 2Å and < 3Å [52]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 50-100 kDa [2]
  • 500-1000 kDa [2]
  • 1-2 MDa [4]
  • 2-5 MDa [18]

Release Date

  • 2026 [24]
  • 2025 [2]
  • 2024 [12]
  • 2023 [19]
  • 2020 [2]
  • 2019 [12]
  • 2011 [1]

Author by name

  • Cate JHD [72]
  • Nissley AJ [34]
  • Kivimae RW [26]
  • Nayak DD [26]
  • Shulgina Y [26]
  • Schepartz A [21]
  • Banfield JF [18]
  • Ward FR [18]
  • Penev PI [16]
  • Majumdar C [15]
  • Williams MC [14]
  • Downing BE [12]
  • Cate J [11]
  • Chang ST [11]
  • Li W [11]
  • Watson ZL [11]
  • Dullea RG [9]
  • Liras S [9]
  • Mcclure KF [9]
  • Montabana E [9]
  • Fitzgerald KA [8]
  • Hamlish NX [8]
  • Kent AD [8]
  • Zhu C [8]
  • Francis MB [7]
  • Walker JA [7]
  • Abramyan AM [4]
  • Kamal TS [4]
  • Knudson IJ [4]
  • Miller SJ [4]
  • Doudna JA [3]
  • Ad O [2]
  • Bernstein RA [2]
  • Boger RS [2]
  • Boyko K [2]
  • Boyko KV [2]
  • Chamraj A [2]
  • Chang S [2]
  • Chen LX [2]
  • Deturk EC [2]
  • Doudna J [2]
  • Esain-garcia I [2]
  • Jacobsen SE [2]
  • Kamalu M [2]
  • Karp HM [2]
  • Kim M [2]
  • Langeberg CJ [2]
  • Loi KJ [2]
  • Nisonoff H [2]
  • Shi H [2]
  • Skopintsev P [2]
  • Vohra K [2]
  • Ward RF [2]
  • Weiss T [2]
  • Yoon PH [2]
  • Zhou Z [2]
  • Ashchyan J [1]
  • Bai Y [1]
  • Fraser CS [1]
  • Gradia S [1]
  • Hamlish N [1]
  • Hartland A [1]
  • Kent A [1]
  • Khabibullina NF [1]
  • Khven IM [1]
  • Lewis C [1]
  • Lewis CS [1]
  • Mergaert P [1]
  • Metelev M [1]
  • Nogales E [1]
  • Osterman IA [1]
  • Polikanov YS [1]
  • Querol-audi J [1]
  • Serebryakova M [1]
  • Severinov K [1]
  • Snyder M [1]
  • Sun C [1]
  • Todorovic A [1]
  • Travin DY [1]
  • Villa N [1]

Author by ORCID

  • Cate JHD [68]
  • Nissley AJ [31]
  • Shulgina Y [23]
  • Schepartz A [21]
  • Banfield JF [18]
  • Penev PI [16]
  • Nayak DD [12]
  • Downing BE [12]
  • Nayak DD [11]
  • Watson ZL [11]
  • Williams MC [11]
  • Kent AD [8]
  • Hamlish NX [8]
  • Zhu C [8]
  • Majumdar C [7]
  • Francis MB [7]
  • Miller SJ [4]
  • Ward FR [4]
  • Abramyan AM [4]
  • Kamal TS [4]
  • Doudna JA [3]
  • Jacobsen SE [2]
  • Karp HM [2]
  • Weiss T [2]
  • Boger RS [2]
  • Langeberg CJ [2]
  • Skopintsev P [2]
  • Yoon PH [2]
  • Nisonoff H [2]
  • Esain-garcia I [2]
  • Chen LX [2]
  • Shi H [2]
  • Deturk EC [2]
  • Chamraj A [2]
  • Loi KJ [2]
  • Kamalu M [2]
  • Khabibullina NF [1]
  • Osterman IA [1]
  • Polikanov YS [1]
  • Serebryakova M [1]
  • Bai Y [1]
  • Mergaert P [1]
  • Travin DY [1]
  • Metelev M [1]
  • Querol-audi J [1]
  • Sun C [1]

Journal

  • BIORXIV [14]
  • NAT MICROBIOL [12]
  • NAT STRUCT MOL BIOL [9]
  • J AM CHEM SOC [8]
  • ACS CENT SCI [7]
  • BIOCHEMISTRY [4]
  • NAT CHEM [4]
  • NUCLEIC ACIDS RES [4]
  • RNA [4]
  • NAT COMMUN [3]
  • SCIENCE [2]
  • PNAS [1]

Software

  • CRYOSPARC [31]
  • RELION [5]
  • CTFFIND [2]
  • EMAN2 [1]

Microscope

  • TFS KRIOS [38]
  • FEI TITAN KRIOS [33]
  • FEI TECNAI 12 [1]

Electron Source

  • FIELD EMISSION GUN [71]
  • LAB6 [1]

Film or detector model

  • GATAN K3 6K X 4K [42]
  • GATAN K3 BIOQUANTUM 6K X 4K [15]
  • GATAN K2 SUMMIT 4K X 4K [14]
  • GENERIC TVIPS 4K X 4K [1]

External links

  • PDB [72]
  • AlphaFold DB [17]
  • PDBe-Kb [17]
  • UniProt [17]
  • Gene Ontology [16]
  • InterPro [16]
  • ChEBI [14]
  • ChEMBL [14]
  • DrugBank [14]
  • Pfam [13]
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Showing 1 - 10 of 72. Page 1 of 8
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EMD-73644
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3D View
AI-generated RNA-guided nuclease TAM-bound state
CryoEM
Release date: July 15, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9yyg
Q-score: 0.456
Similar entry percentile: 25%

Skopintsev P, Esain-Garcia I, DeTurk EC, Yoon PH, Zhou Z, Weiss T, Kamalu M, Chamraj A, Loi KJ, Langeberg CJ, Boger RS, Nisonoff H, Karp HM, Chen LX, Shi H, Vohra K, Banfield JF, Cate JHD, Jacobsen SE, Doudna JA

Science (2026) 393 pp. 313-318 [ Pubmed: 42462008 DOI: doi:10.1126/science.aed6123 ]

EMD-73645
Download Map
3D View
AI-generated RNA-guided nuclease R-loop formed state
CryoEM
Release date: July 15, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9yyh
Q-score: 0.441
Similar entry percentile: 20%

Skopintsev P, Esain-Garcia I, DeTurk EC, Yoon PH, Zhou Z, Weiss T, Kamalu M, Chamraj A, Loi KJ, Langeberg CJ, Boger RS, Nisonoff H, Karp HM, Chen LX, Shi H, Vohra K, Banfield JF, Cate JHD, Jacobsen SE, Doudna JA

Science (2026) 393 pp. 313-318 [ Pubmed: 42462008 DOI: doi:10.1126/science.aed6123 ]

EMD-70477
Download Map
3D View
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta 2 hydroxyBocK-tRNAPyl
Consensus map
CryoEM
Release date: April 1, 2026
Resolution: 2.32 Å
EM Method: Single-particle

Majumdar C, Kent AD, Hamlish NX, Zhu C, Fitzgerald KA, Cate JHD, Schepartz A

J Am Chem Soc (2026) 148 pp. 9393-9399 [ DOI: doi:10.1021/jacs.5c18603 Pubmed: 41757712 ]

EMD-70050
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3D View
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site S -betahydroxyBocK charged NH-tRNAPyl
Composite map
CryoEM
Release date: March 18, 2026
Resolution: 2.29 Å
EM Method: Single-particle
Fitted PDBs: 9o2x
Q-score: 0.526
Similar entry percentile: 21%

Majumdar C, Kent AD, Hamlish NX, Zhu C, Fitzgerald KA, Cate JHD, Schepartz A

J Am Chem Soc (2026) 148 pp. 9393-9399 [ DOI: doi:10.1021/jacs.5c18603 Pubmed: 41757712 ]

EMD-70051
Download Map
3D View
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site R beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Composite map
CryoEM
Release date: March 18, 2026
Resolution: 2.14 Å
EM Method: Single-particle
Fitted PDBs: 9o2y
Q-score: 0.61
Similar entry percentile: 51%

Majumdar C, Kent AD, Hamlish NX, Zhu C, Fitzgerald KA, Cate JHD, Schepartz A

J Am Chem Soc (2026) 148 pp. 9393-9399 [ DOI: doi:10.1021/jacs.5c18603 Pubmed: 41757712 ]

EMD-70052
Download Map
3D View
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta 2 hydroxyBocK-tRNAPyl
CryoEM
Release date: March 18, 2026
Resolution: 2.29 Å
EM Method: Single-particle

Majumdar C, Kent AD, Hamlish NX, Zhu C, Fitzgerald KA, Cate JHD, Schepartz A

J Am Chem Soc (2026) 148 pp. 9393-9399 [ DOI: doi:10.1021/jacs.5c18603 Pubmed: 41757712 ]

EMD-70054
Download Map
3D View
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta 2 hydroxyBocK-tRNAPyl
CryoEM
Release date: March 18, 2026
Resolution: 2.56 Å
EM Method: Single-particle

Majumdar C, Kent AD, Hamlish NX, Zhu C, Fitzgerald KA, Cate JHD, Schepartz A

J Am Chem Soc (2026) 148 pp. 9393-9399 [ DOI: doi:10.1021/jacs.5c18603 Pubmed: 41757712 ]

EMD-70478
Download Map
3D View
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta 2 hydroxyBocK-tRNAPyl
CryoEM
Release date: March 18, 2026
Resolution: 2.17 Å
EM Method: Single-particle

Majumdar C, Kent AD, Hamlish NX, Zhu C, Fitzgerald KA, Cate JHD, Schepartz A

J Am Chem Soc (2026) 148 pp. 9393-9399 [ DOI: doi:10.1021/jacs.5c18603 Pubmed: 41757712 ]

EMD-70055
Download Map
3D View
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta 2 hydroxyBocK-tRNAPyl
Focused map
CryoEM
Release date: March 11, 2026
Resolution: 2.14 Å
EM Method: Single-particle

Majumdar C, Kent AD, Hamlish NX, Zhu C, Fitzgerald KA, Cate JHD, Schepartz A

J Am Chem Soc (2026) 148 pp. 9393-9399 [ DOI: doi:10.1021/jacs.5c18603 Pubmed: 41757712 ]

EMD-70056
Download Map
3D View
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta 2 hydroxyBocK-tRNAPyl
Consensus map
CryoEM
Release date: March 11, 2026
Resolution: 2.45 Å
EM Method: Single-particle

Majumdar C, Kent AD, Hamlish NX, Zhu C, Fitzgerald KA, Cate JHD, Schepartz A

J Am Chem Soc (2026) 148 pp. 9393-9399 [ DOI: doi:10.1021/jacs.5c18603 Pubmed: 41757712 ]

Sort by: Download
Showing 1 - 10 of 72. Page 1 of 8
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [72]

Current status

  • REL [72]

Sample type

  • Complex [71]
  • RNA [21]
  • Protein [19]
  • Ligand [14]
  • DNA [2]
  • Cellular component [1]
  • Sample [1]

Organism

  • Escherichia coli [32]
  • Methanosarcina acetivorans [14]
  • Pyrobaculum calidifontis [12]
  • Homo sapiens [12]
  • Candidatus methanomethylophilus alvus [2]
  • Deinococcus radiodurans [2]
  • Synthetic construct [2]
  • Rhizobium sp. pop5 [1]

EM Method

  • Single-particle [72]

Resolution

  • < 2Å [8]
  • ≥ 2Å and < 3Å [52]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 50-100 kDa [2]
  • 500-1000 kDa [2]
  • 1-2 MDa [4]
  • 2-5 MDa [18]

Release Date

  • 2026 [24]
  • 2025 [2]
  • 2024 [12]
  • 2023 [19]
  • 2020 [2]
  • 2019 [12]
  • 2011 [1]

Author by name

  • Cate JHD [72]
  • Nissley AJ [34]
  • Kivimae RW [26]
  • Nayak DD [26]
  • Shulgina Y [26]
  • Schepartz A [21]
  • Banfield JF [18]
  • Ward FR [18]
  • Penev PI [16]
  • Majumdar C [15]
  • Williams MC [14]
  • Downing BE [12]
  • Cate J [11]
  • Chang ST [11]
  • Li W [11]
  • Watson ZL [11]
  • Dullea RG [9]
  • Liras S [9]
  • Mcclure KF [9]
  • Montabana E [9]
  • Fitzgerald KA [8]
  • Hamlish NX [8]
  • Kent AD [8]
  • Zhu C [8]
  • Francis MB [7]
  • Walker JA [7]
  • Abramyan AM [4]
  • Kamal TS [4]
  • Knudson IJ [4]
  • Miller SJ [4]
  • Doudna JA [3]
  • Ad O [2]
  • Bernstein RA [2]
  • Boger RS [2]
  • Boyko K [2]
  • Boyko KV [2]
  • Chamraj A [2]
  • Chang S [2]
  • Chen LX [2]
  • Deturk EC [2]
  • Doudna J [2]
  • Esain-garcia I [2]
  • Jacobsen SE [2]
  • Kamalu M [2]
  • Karp HM [2]
  • Kim M [2]
  • Langeberg CJ [2]
  • Loi KJ [2]
  • Nisonoff H [2]
  • Shi H [2]
  • Skopintsev P [2]
  • Vohra K [2]
  • Ward RF [2]
  • Weiss T [2]
  • Yoon PH [2]
  • Zhou Z [2]
  • Ashchyan J [1]
  • Bai Y [1]
  • Fraser CS [1]
  • Gradia S [1]
  • Hamlish N [1]
  • Hartland A [1]
  • Kent A [1]
  • Khabibullina NF [1]
  • Khven IM [1]
  • Lewis C [1]
  • Lewis CS [1]
  • Mergaert P [1]
  • Metelev M [1]
  • Nogales E [1]
  • Osterman IA [1]
  • Polikanov YS [1]
  • Querol-audi J [1]
  • Serebryakova M [1]
  • Severinov K [1]
  • Snyder M [1]
  • Sun C [1]
  • Todorovic A [1]
  • Travin DY [1]
  • Villa N [1]

Author by ORCID

  • Cate JHD [68]
  • Nissley AJ [31]
  • Shulgina Y [23]
  • Schepartz A [21]
  • Banfield JF [18]
  • Penev PI [16]
  • Nayak DD [12]
  • Downing BE [12]
  • Nayak DD [11]
  • Watson ZL [11]
  • Williams MC [11]
  • Kent AD [8]
  • Hamlish NX [8]
  • Zhu C [8]
  • Majumdar C [7]
  • Francis MB [7]
  • Miller SJ [4]
  • Ward FR [4]
  • Abramyan AM [4]
  • Kamal TS [4]
  • Doudna JA [3]
  • Jacobsen SE [2]
  • Karp HM [2]
  • Weiss T [2]
  • Boger RS [2]
  • Langeberg CJ [2]
  • Skopintsev P [2]
  • Yoon PH [2]
  • Nisonoff H [2]
  • Esain-garcia I [2]
  • Chen LX [2]
  • Shi H [2]
  • Deturk EC [2]
  • Chamraj A [2]
  • Loi KJ [2]
  • Kamalu M [2]
  • Khabibullina NF [1]
  • Osterman IA [1]
  • Polikanov YS [1]
  • Serebryakova M [1]
  • Bai Y [1]
  • Mergaert P [1]
  • Travin DY [1]
  • Metelev M [1]
  • Querol-audi J [1]
  • Sun C [1]

Journal

  • BIORXIV [14]
  • NAT MICROBIOL [12]
  • NAT STRUCT MOL BIOL [9]
  • J AM CHEM SOC [8]
  • ACS CENT SCI [7]
  • BIOCHEMISTRY [4]
  • NAT CHEM [4]
  • NUCLEIC ACIDS RES [4]
  • RNA [4]
  • NAT COMMUN [3]
  • SCIENCE [2]
  • PNAS [1]

Software

  • CRYOSPARC [31]
  • RELION [5]
  • CTFFIND [2]
  • EMAN2 [1]

Microscope

  • TFS KRIOS [38]
  • FEI TITAN KRIOS [33]
  • FEI TECNAI 12 [1]

Electron Source

  • FIELD EMISSION GUN [71]
  • LAB6 [1]

Film or detector model

  • GATAN K3 6K X 4K [42]
  • GATAN K3 BIOQUANTUM 6K X 4K [15]
  • GATAN K2 SUMMIT 4K X 4K [14]
  • GENERIC TVIPS 4K X 4K [1]

External links

  • PDB [72]
  • AlphaFold DB [17]
  • PDBe-Kb [17]
  • UniProt [17]
  • Gene Ontology [16]
  • InterPro [16]
  • ChEBI [14]
  • ChEMBL [14]
  • DrugBank [14]
  • Pfam [13]