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author:"Burlingame AL"

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Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • Protein [4]
  • DNA [3]

Organism

  • Saccharomyces cerevisiae [4]
  • Homo sapiens [3]
  • Legionella pneumophila [1]
  • Legionella pneumophila [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [4]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 1-2 MDa [1]
  • 2-5 MDa [1]

Release Date

  • 2023 [1]
  • 2020 [3]
  • 2017 [1]
  • 2016 [3]

Author by name

  • Burlingame AL [8]
  • Trnka MJ [7]
  • Anghel SA [3]
  • Bushnell DA [3]
  • Davis RE [3]
  • Fuller JR [3]
  • Hu H [3]
  • Keenan RJ [3]
  • Kornberg RD [3]
  • Mattei PJ [3]
  • Mcgilvray PT [3]
  • Robinson PJ [3]
  • Sundaram A [3]
  • Zhong F [3]
  • Chalkley RJ [1]
  • Cheng Y [1]
  • Echeverria I [1]
  • Floor SN [1]
  • Johnston JB [1]
  • Krogan NJ [1]
  • Kwok S [1]
  • Li KH [1]
  • Moss T [1]
  • Mukherjee S [1]
  • Narlikar GJ [1]
  • Palovcak E [1]
  • Pulido EH [1]
  • Sali A [1]
  • Sangwan S [1]
  • Sil A [1]
  • Stevenson E [1]
  • Stoddard CI [1]
  • Subramanian A [1]
  • Swaney DL [1]
  • Voorhies M [1]
  • Walter P [1]
  • Wang L [1]
  • Zhou CY [1]

Author by ORCID

  • Trnka MJ [7]
  • Mcgilvray PT [3]
  • Fuller JR [3]
  • Keenan RJ [3]
  • Cheng Y [1]
  • Pulido EH [1]
  • Walter P [1]
  • Burlingame AL [1]
  • Wang L [1]
  • Chalkley RJ [1]
  • Floor SN [1]
  • Subramanian A [1]
  • Moss T [1]
  • Mukherjee S [1]
  • Echeverria I [1]
  • Krogan NJ [1]

Journal

  • CELL [3]
  • ELIFE [3]
  • CELL REP [1]
  • NAT CELL BIOL [1]

Software

  • RELION [6]
  • GCTF [3]
  • CTFFIND [2]
  • CFTFIND [1]

Microscope

  • FEI TITAN KRIOS [5]
  • FEI TECNAI F20 [3]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K3 6K X 4K [4]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • PDB [8]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • UniProt [2]
  • Pfam [1]
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EMD-36294
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Legionella effector protein SidI
CryoEM
Release date: Aug. 30, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8jhu
Q-score: 0.526
Similar entry percentile: 72%

Subramanian A, Wang L, Moss T, Voorhies M, Sangwan S, Stevenson E, Pulido EH, Kwok S, Chalkley RJ, Li KH, Krogan NJ, Swaney DL, Burlingame AL, Floor SN, Sil A, Walter P, Mukherjee S

Nat Cell Biol (2023) 25 pp. 1600-1615 [ DOI: doi:10.1038/s41556-023-01248-z Pubmed: 37857833 ]

EMD-21426
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Single Particle Cryo-EM Structure of the Natively Isolated Sec61 complex, TMCO1, Nicalin, TMEM147, and CCDC47 Containing Translocon
CryoEM
Release date: Sept. 2, 2020
Resolution: 3.84 Å
EM Method: Single-particle

McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ

eLife (2020) 9 [ DOI: doi:10.7554/eLife.56889 Pubmed: 32820719 ]

EMD-21427
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Single Particle Cryo-EM Structure of the Natively Isolated Sec61, TMCO1, Nicalin, TMEM147, and CCDC47 Containing Ribosome-Translocon Complex
CryoEM
Release date: Sept. 2, 2020
Resolution: 3.4 Å
EM Method: Single-particle

McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ

eLife (2020) 9 [ DOI: doi:10.7554/eLife.56889 Pubmed: 32820719 ]

EMD-21435
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Single Particle Cryo-EM Structure of the Natively Isolated Sec61, TMCO1, Nicalin, TMEM147, and CCDC47 Containing Ribosome-Translocon Complex After Focused Refinement with Local Angular Searches
CryoEM
Release date: Sept. 2, 2020
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6w6l
Q-score: 0.291
Similar entry percentile: 14%

McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ

eLife (2020) 9 [ DOI: doi:10.7554/eLife.56889 Pubmed: 32820719 ]

EMD-8696
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Regulation of Rvb1/Rvb2 by a domain within the INO80 chromatin remodeling complex implicates the yeast Rvbs as protein assembly chaperones
CryoEM
Release date: June 7, 2017
Resolution: 9.6 Å
EM Method: Single-particle

Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ

Cell Rep (2017) 19 pp. 2033-2044 [ Pubmed: 28591576 DOI: doi:10.1016/j.celrep.2017.05.029 ]

EMD-8305
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Mediator-RNA Polymerase II Pre-Initiation Complex Delta Mediator Tail Focused Refinement
CryoEM
Release date: Sept. 14, 2016
Resolution: 15.3 Å
EM Method: Single-particle
Fitted PDBs: 5sva
Q-score: 0.049
Similar entry percentile: 53%

Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD

Cell (2016) 166 pp. 1411-1422.e16 [ Pubmed: 27610567 DOI: doi:10.1016/j.cell.2016.08.050 ]

EMD-8307
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Mediator-RNA Polymerase II Pre-Initiation Complex Delta TFIIE-IIH Focused refinement
CryoEM
Release date: Sept. 14, 2016
Resolution: 16.8 Å
EM Method: Single-particle

Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD

Cell (2016) 166 pp. 1411-1422.e16 [ Pubmed: 27610567 DOI: doi:10.1016/j.cell.2016.08.050 ]

EMD-8308
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3D View
Mediator-RNA Polymerase II Pre-Initiation Complex
CryoEM
Release date: Sept. 14, 2016
Resolution: 21.9 Å
EM Method: Single-particle

Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD

Cell (2016) 166 pp. 1411-1422.e16 [ Pubmed: 27610567 DOI: doi:10.1016/j.cell.2016.08.050 ]

Sort by: Download
Showing 1 - 8 of 8. Page 1 of 1
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [8]

Current status

  • REL [8]

Sample type

  • Complex [8]
  • Protein [4]
  • DNA [3]

Organism

  • Saccharomyces cerevisiae [4]
  • Homo sapiens [3]
  • Legionella pneumophila [1]
  • Legionella pneumophila [1]

EM Method

  • Single-particle [8]

Resolution

  • ≥ 3Å and < 4Å [4]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 1-2 MDa [1]
  • 2-5 MDa [1]

Release Date

  • 2023 [1]
  • 2020 [3]
  • 2017 [1]
  • 2016 [3]

Author by name

  • Burlingame AL [8]
  • Trnka MJ [7]
  • Anghel SA [3]
  • Bushnell DA [3]
  • Davis RE [3]
  • Fuller JR [3]
  • Hu H [3]
  • Keenan RJ [3]
  • Kornberg RD [3]
  • Mattei PJ [3]
  • Mcgilvray PT [3]
  • Robinson PJ [3]
  • Sundaram A [3]
  • Zhong F [3]
  • Chalkley RJ [1]
  • Cheng Y [1]
  • Echeverria I [1]
  • Floor SN [1]
  • Johnston JB [1]
  • Krogan NJ [1]
  • Kwok S [1]
  • Li KH [1]
  • Moss T [1]
  • Mukherjee S [1]
  • Narlikar GJ [1]
  • Palovcak E [1]
  • Pulido EH [1]
  • Sali A [1]
  • Sangwan S [1]
  • Sil A [1]
  • Stevenson E [1]
  • Stoddard CI [1]
  • Subramanian A [1]
  • Swaney DL [1]
  • Voorhies M [1]
  • Walter P [1]
  • Wang L [1]
  • Zhou CY [1]

Author by ORCID

  • Trnka MJ [7]
  • Mcgilvray PT [3]
  • Fuller JR [3]
  • Keenan RJ [3]
  • Cheng Y [1]
  • Pulido EH [1]
  • Walter P [1]
  • Burlingame AL [1]
  • Wang L [1]
  • Chalkley RJ [1]
  • Floor SN [1]
  • Subramanian A [1]
  • Moss T [1]
  • Mukherjee S [1]
  • Echeverria I [1]
  • Krogan NJ [1]

Journal

  • CELL [3]
  • ELIFE [3]
  • CELL REP [1]
  • NAT CELL BIOL [1]

Software

  • RELION [6]
  • GCTF [3]
  • CTFFIND [2]
  • CFTFIND [1]

Microscope

  • FEI TITAN KRIOS [5]
  • FEI TECNAI F20 [3]

Electron Source

  • FIELD EMISSION GUN [8]

Film or detector model

  • GATAN K3 6K X 4K [4]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • PDB [8]
  • AlphaFold DB [2]
  • Gene Ontology [2]
  • InterPro [2]
  • PDBe-Kb [2]
  • UniProt [2]
  • Pfam [1]