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author:"Bonomi M"

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Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Protein [14]
  • Complex [10]
  • Ligand [10]
  • Tissue [4]

Organism

  • Homo sapiens [7]
  • Sus scrofa [4]
  • Staphylococcus aureus [2]
  • Staphylococcus aureus [1]

EM Method

  • Single-particle [10]
  • Helical reconstruction [4]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [4]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [3]
  • 500-1000 kDa [5]
  • 5-10 MDa [2]

Release Date

  • 2025 [5]
  • 2021 [2]
  • 2019 [4]
  • 2018 [3]

Author by name

  • Bonomi M [14]
  • Fraser JS [9]
  • Vendruscolo M [7]
  • Arada A [5]
  • Bajaj P [5]
  • Greene E [5]
  • Greene ER [5]
  • Hoff SE [5]
  • Kollman JM [5]
  • Lee DJ [5]
  • Lee GM [5]
  • Muniz R [5]
  • Muniz RS [5]
  • Thompson EM [5]
  • Yamamura H [5]
  • Eshun-wilson L [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Nogales E [4]
  • Portran D [4]
  • Toso DB [4]
  • Zhang R [4]
  • Houry WA [3]
  • Juravsky JB [3]
  • Kay LE [3]
  • Mabanglo MF [3]
  • Ripstein ZA [3]
  • Rizzolo K [3]
  • Rubinstein JL [3]
  • Vahidi S [3]
  • Velyvis A [3]
  • Yuwen T [3]
  • Garaeva AA [2]
  • Garibsingh RA [2]
  • Grewer C [2]
  • Ndaru E [2]
  • Paulino C [2]
  • Schlessinger A [2]
  • Shi Y [2]
  • Slotboom DJ [2]
  • Zakrepine P [2]
  • Zielewicz L [2]

Author by ORCID

  • Bonomi M [14]
  • Bajaj P [5]
  • Kollman JM [5]
  • Fraser JS [5]
  • Lee DJ [5]
  • Thompson EM [5]
  • Greene E [5]
  • Hoff SE [5]
  • Eshun-wilson L [4]
  • Nogales E [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Vahidi S [3]
  • Vendruscolo M [3]
  • Rizzolo K [3]
  • Yuwen T [3]
  • Ripstein ZA [3]
  • Paulino C [2]
  • Garibsingh RA [2]
  • Slotboom DJ [2]
  • Garaeva AA [2]
  • Grewer C [2]
  • Ndaru E [2]
  • Schlessinger A [2]

Journal

  • PNAS [9]
  • BIORXIV [5]

Software

  • CRYOSPARC [7]
  • EMAN [4]
  • FREALIGN [4]
  • APPION [3]
  • CTFFIND [2]
  • RELION [2]

Microscope

  • FEI TITAN KRIOS [5]
  • TFS KRIOS [5]
  • FEI TALOS ARCTICA [2]
  • FEI TECNAI F20 [2]

Electron Source

  • FIELD EMISSION GUN [14]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [12]
  • Gene Ontology [12]
  • PDB [12]
  • Pfam [12]
  • UniProt [12]
  • PDBe-Kb [11]
  • ChEBI [9]
  • DrugBank [9]
  • ChEMBL [8]
  • Complex Portal [7]
  • InterPro [7]
  • CATH [3]
  • SCOP2 [1]
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Showing 1 - 10 of 14. Page 1 of 2
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EMD-70841
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3D View
Human glutamine synthetase filament under turnover conditions
Release date: July 2, 2025
Resolution: 2.19 Å
EM Method: Single-particle
Fitted PDBs: 9otm
Q-score: 0.6

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ Pubmed: 40631248 DOI: doi:10.1101/2025.07.04.663231 ]

EMD-70842
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3D View
Human glutamine synthetase filament bound to ATP
Release date: July 2, 2025
Resolution: 2.11 Å
EM Method: Single-particle
Fitted PDBs: 9otn
Q-score: 0.714

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ Pubmed: 40631248 DOI: doi:10.1101/2025.07.04.663231 ]

EMD-70843
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3D View
Human glutamine synthetase decamer under turnover conditions
Release date: July 2, 2025
Resolution: 2.03 Å
EM Method: Single-particle
Fitted PDBs: 9oto
Q-score: 0.623

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ Pubmed: 40631248 DOI: doi:10.1101/2025.07.04.663231 ]

EMD-70844
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Human glutamine synthetase R298A decamer under turnover conditions
Release date: July 2, 2025
Resolution: 1.95 Å
EM Method: Single-particle
Fitted PDBs: 9otp
Q-score: 0.638

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ Pubmed: 40631248 DOI: doi:10.1101/2025.07.04.663231 ]

EMD-70845
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3D View
Human glutamine synthetase filament apo
Release date: July 2, 2025
Resolution: 2.27 Å
EM Method: Single-particle
Fitted PDBs: 9otq
Q-score: 0.644

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ Pubmed: 40631248 DOI: doi:10.1101/2025.07.04.663231 ]

EMD-12142
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ASCT2 in the presence of the inhibitor Lc-BPE in the outward-open conformation.
Release date: Sept. 22, 2021
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 7bcq
Q-score: 0.427

Garibsingh RA, Ndaru E, Garaeva AA, Shi Y, Zielewicz L, Zakrepine P, Bonomi M, Slotboom DJ, Paulino C, Grewer C, Schlessinger A

PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2104093118 Pubmed: 34507995 ]

EMD-12143
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ASCT2 in the presence of the inhibitor ERA-21 in the outward-open conformation.
Release date: Sept. 22, 2021
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 7bct
Q-score: 0.382

Garibsingh RA, Ndaru E, Garaeva AA, Shi Y, Zielewicz L, Zakrepine P, Bonomi M, Slotboom DJ, Paulino C, Grewer C, Schlessinger A

PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2104093118 Pubmed: 34507995 ]

EMD-0612
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3D View
CryoEM Density of Acetylated Microtubules
Release date: May 22, 2019
Resolution: 3.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 6o2q
Q-score: 0.428

Eshun-Wilson L, Zhang R, Portran D, Nachury MV, Toso DB, Lohr T, Vendruscolo M, Bonomi M, Fraser JS, Nogales E

PNAS (2019) 116 pp. 10366-10371 [ DOI: doi:10.1073/pnas.1900441116 Pubmed: 31072936 ]

EMD-0613
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3D View
Deacetylated Microtubules
Release date: May 22, 2019
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 6o2r
Q-score: 0.461

Eshun-Wilson L, Zhang R, Portran D, Nachury MV, Toso DB, Lohr T, Vendruscolo M, Bonomi M, Fraser JS, Nogales E

PNAS (2019) 116 pp. 10366-10371 [ DOI: doi:10.1073/pnas.1900441116 Pubmed: 31072936 ]

EMD-0614
Download Map
3D View
Deacetylated Microtubules
Release date: May 22, 2019
Resolution: 4.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 6o2s
Q-score: 0.275

Eshun-Wilson L, Zhang R, Portran D, Nachury MV, Toso DB, Lohr T, Vendruscolo M, Bonomi M, Fraser JS, Nogales E

PNAS (2019) 116 pp. 10366-10371 [ DOI: doi:10.1073/pnas.1900441116 Pubmed: 31072936 ]

Sort by: Download
Showing 1 - 10 of 14. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Protein [14]
  • Complex [10]
  • Ligand [10]
  • Tissue [4]

Organism

  • Homo sapiens [7]
  • Sus scrofa [4]
  • Staphylococcus aureus [2]
  • Staphylococcus aureus [1]

EM Method

  • Single-particle [10]
  • Helical reconstruction [4]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [4]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [3]
  • 500-1000 kDa [5]
  • 5-10 MDa [2]

Release Date

  • 2025 [5]
  • 2021 [2]
  • 2019 [4]
  • 2018 [3]

Author by name

  • Bonomi M [14]
  • Fraser JS [9]
  • Vendruscolo M [7]
  • Arada A [5]
  • Bajaj P [5]
  • Greene E [5]
  • Greene ER [5]
  • Hoff SE [5]
  • Kollman JM [5]
  • Lee DJ [5]
  • Lee GM [5]
  • Muniz R [5]
  • Muniz RS [5]
  • Thompson EM [5]
  • Yamamura H [5]
  • Eshun-wilson L [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Nogales E [4]
  • Portran D [4]
  • Toso DB [4]
  • Zhang R [4]
  • Houry WA [3]
  • Juravsky JB [3]
  • Kay LE [3]
  • Mabanglo MF [3]
  • Ripstein ZA [3]
  • Rizzolo K [3]
  • Rubinstein JL [3]
  • Vahidi S [3]
  • Velyvis A [3]
  • Yuwen T [3]
  • Garaeva AA [2]
  • Garibsingh RA [2]
  • Grewer C [2]
  • Ndaru E [2]
  • Paulino C [2]
  • Schlessinger A [2]
  • Shi Y [2]
  • Slotboom DJ [2]
  • Zakrepine P [2]
  • Zielewicz L [2]

Author by ORCID

  • Bonomi M [14]
  • Bajaj P [5]
  • Kollman JM [5]
  • Fraser JS [5]
  • Lee DJ [5]
  • Thompson EM [5]
  • Greene E [5]
  • Hoff SE [5]
  • Eshun-wilson L [4]
  • Nogales E [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Vahidi S [3]
  • Vendruscolo M [3]
  • Rizzolo K [3]
  • Yuwen T [3]
  • Ripstein ZA [3]
  • Paulino C [2]
  • Garibsingh RA [2]
  • Slotboom DJ [2]
  • Garaeva AA [2]
  • Grewer C [2]
  • Ndaru E [2]
  • Schlessinger A [2]

Journal

  • PNAS [9]
  • BIORXIV [5]

Software

  • CRYOSPARC [7]
  • EMAN [4]
  • FREALIGN [4]
  • APPION [3]
  • CTFFIND [2]
  • RELION [2]

Microscope

  • FEI TITAN KRIOS [5]
  • TFS KRIOS [5]
  • FEI TALOS ARCTICA [2]
  • FEI TECNAI F20 [2]

Electron Source

  • FIELD EMISSION GUN [14]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [8]
  • GATAN K3 BIOQUANTUM 6K X 4K [4]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K3 6K X 4K [1]

External links

  • AlphaFold DB [12]
  • Gene Ontology [12]
  • PDB [12]
  • Pfam [12]
  • UniProt [12]
  • PDBe-Kb [11]
  • ChEBI [9]
  • DrugBank [9]
  • ChEMBL [8]
  • Complex Portal [7]
  • InterPro [7]
  • CATH [3]
  • SCOP2 [1]