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author:"Aibara S"

Filter By

Current Database

  • EMDB [119]
  • EMPIAR [1]

Current status

  • REL [120]

Sample type

  • Complex [116]
  • Protein [56]
  • Ligand [48]
  • RNA [27]
  • DNA [19]
  • Cellular component [2]
  • Sample [1]

Organism

  • Homo sapiens [84]
  • Synthetic construct [17]
  • Sus scrofa [12]
  • Saccharomyces cerevisiae [10]
  • Sus scrofa [10]
  • Human mastadenovirus c [9]
  • Spinacia oleracea [6]
  • Neurospora crassa [4]
  • Staphylococcus aureus [2]
  • Neurospora crassa [2]
  • Unidentified adenovirus [1]
  • Saccharomyces cerevisiae [1]
  • Trypanosoma brucei [1]
  • Trichoplusia ni [1]

EM Method

  • Single-particle [117]
  • Helical reconstruction [2]

Resolution

  • ≥ 2Å and < 3Å [22]
  • ≥ 3Å and < 4Å [70]
  • ≥ 4Å and < 5Å [14]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [9]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [2]
  • 250-500 kDa [4]
  • 500-1000 kDa [8]
  • 1-2 MDa [25]
  • 2-5 MDa [15]

Release Date

  • 2026 [1]
  • 2025 [44]
  • 2023 [2]
  • 2022 [1]
  • 2021 [42]
  • 2020 [16]
  • 2019 [1]
  • 2018 [3]
  • 2017 [7]
  • 2016 [3]

Author by name

  • Aibara S [120]
  • Cramer P [44]
  • Boshnakovska A [39]
  • Finke AF [39]
  • Heinrichs M [39]
  • Hillen HS [39]
  • Krempler A [39]
  • Rehling P [39]
  • Richter-dennerlein R [39]
  • Schilbach S [33]
  • Amunts A [24]
  • Dienemann C [16]
  • Forsberg BO [13]
  • Lindahl E [13]
  • Singh V [11]
  • Grabbe F [10]
  • Modelska A [9]
  • Kimanius D [8]
  • Howard RJ [7]
  • Mortezaei N [7]
  • Zhang S [7]
  • Paul B [6]
  • Agafonov DE [4]
  • Luhrmann R [4]
  • Tobiasson V [4]
  • Vos SM [4]
  • Andrell J [3]
  • Bai XC [3]
  • Barrientos A [3]
  • Batters C [3]
  • Boerema AP [3]
  • Del Olio S [3]
  • Flygaard RK [3]
  • Gordiyenko Y [3]
  • Hassan A [3]
  • Itoh Y [3]
  • Izumikawa K [3]
  • Luehrmann R [3]
  • Maier K [3]
  • Naschberger A [3]
  • Nobe Y [3]
  • Rorbach J [3]
  • Schmitzova J [3]
  • Taoka M [3]
  • Wallden K [3]
  • Whitford PC [3]
  • Zhang L [3]
  • Zumer K [3]
  • Althage M [2]
  • Barford D [2]
  • Bashan A [2]
  • Basu A [2]
  • Brown A [2]
  • Chang L [2]
  • Correia C [2]
  • Kassner A [2]
  • Klingel K [2]
  • Li Q [2]
  • Matzov D [2]
  • Milting H [2]
  • Oliveira TM [2]
  • Papworth M [2]
  • Perez Borema A [2]
  • Ramakrishnan V [2]
  • Rathore S [2]
  • Rengachari S [2]
  • Wang QD [2]
  • Wong E [2]
  • Yang J [2]
  • Yap MF [2]
  • Yonath AE [2]
  • Zhang Z [2]
  • Zimmerman E [2]
  • De Oliveira Tm [2]
  • Adami V [1]
  • Adhikari S [1]
  • Ambrosini C [1]
  • Ashraf SN [1]
  • Baker DJ [1]
  • Baradaran R [1]
  • Barrey EJ [1]
  • Bigalke JM [1]
  • Breccia P [1]
  • Broso F [1]
  • Buccarelli M [1]
  • Centrella PA [1]
  • Crowther D [1]
  • D Alessandris Qg [1]
  • Dahl G [1]
  • Dickson P [1]
  • Dorbeus S [1]
  • Fianu I [1]
  • Gahura O [1]
  • Gancedo-rodrigo M [1]
  • George G [1]
  • Giannetti S [1]
  • Gikunju D [1]
  • Gordon E [1]
  • Guida M [1]
  • Guie MA [1]

Author by ORCID

  • Schilbach S [33]
  • Rehling P [32]
  • Finke AF [32]
  • Richter-dennerlein R [32]
  • Hillen HS [32]
  • Boshnakovska A [32]
  • Cramer P [31]
  • Aibara S [31]
  • Amunts A [20]
  • Singh V [11]
  • Modelska A [9]
  • Forsberg BO [9]
  • Zhang S [7]
  • Howard RJ [6]
  • Tobiasson V [4]
  • Agafonov DE [4]
  • Vos SM [4]
  • Taoka M [3]
  • Nobe Y [3]
  • Whitford PC [3]
  • Itoh Y [3]
  • Barrientos A [3]
  • Boerema AP [3]
  • Rorbach J [3]
  • Hassan A [3]
  • Paul B [3]
  • Andrell J [3]
  • Zumer K [3]
  • Zhang L [3]
  • Batters C [3]
  • Rathore S [2]
  • Wang QD [2]
  • Brown A [2]
  • Bai XC [2]
  • Ramakrishnan V [2]
  • Basu A [2]
  • De Oliveira Tm [2]
  • Yap MF [2]
  • Baker DJ [1]
  • Zhang Y [1]
  • Ricci-vitiani L [1]
  • Crowther D [1]
  • Ambrosini C [1]
  • Lewis RJ [1]
  • Adami V [1]
  • Broso F [1]
  • Petrovic D [1]
  • Dienemann C [1]
  • Gahura O [1]
  • Ron D [1]
  • Soldano A [1]
  • Re A [1]
  • Sandmark J [1]
  • Bigalke JM [1]
  • Sighel D [1]
  • Ward L [1]
  • Baradaran R [1]
  • Rosatti EF [1]
  • Roth R [1]
  • Harding HP [1]
  • Fianu I [1]
  • Zikova A [1]
  • Dickson P [1]
  • Shilliday F [1]
  • Gancedo-rodrigo M [1]
  • Buccarelli M [1]
  • Maia De Oliveira T [1]
  • Quattrone A [1]
  • Notarangelo M [1]
  • Rengachari S [1]
  • Keefe AD [1]
  • Stringfellow D [1]

Journal

  • NAT COMMUN [57]
  • NATURE [22]
  • CELL [10]
  • ELIFE [8]
  • NUCLEIC ACIDS RES [4]
  • SCIENCE [4]
  • BIORXIV [3]
  • IUCRJ [3]
  • NAT PLANTS [3]
  • NAT STRUCT MOL BIOL [2]
  • PNAS [2]
  • CELL REP [1]
  • COMMUN BIOL [1]
  • EMBO J [1]
  • J STRUCT BIOL [1]
  • SCI ADV [1]

Software

  • RELION [63]
  • CRYOSPARC [42]
  • WARP [7]
  • GCTF [2]

Microscope

  • FEI TITAN KRIOS [90]
  • TFS KRIOS [21]
  • FEI TALOS ARCTICA [4]
  • FEI POLARA 300 [2]
  • FEI TITAN [2]

Electron Source

  • FIELD EMISSION GUN [119]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [64]
  • GATAN K2 SUMMIT 4K X 4K [24]
  • FEI FALCON II 4K X 4K [12]
  • GATAN K3 6K X 4K [8]
  • GATAN K2 QUANTUM 4K X 4K [6]
  • FEI FALCON IV 4K X 4K [2]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]
  • TFS FALCON 4I 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - SINGLE FRAME [1]

External links

  • PDB [119]
  • AlphaFold DB [56]
  • PDBe-Kb [56]
  • UniProt [56]
  • InterPro [53]
  • Gene Ontology [52]
  • Pfam [52]
  • ChEBI [47]
  • DrugBank [47]
  • ChEMBL [46]
  • Complex Portal [24]
  • SCOP2 [8]
  • EMPIAR [3]
  • CATH [2]
  • EMDB [1]
Sort by: Download
Showing 1 - 10 of 120. Page 1 of 12
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EMD-53004
Download Map
3D View
Structure of eIF2B decamer bound to P eIF2 alpha and Compound A- S
CryoEM
Release date: May 13, 2026
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 9qc6
Q-score: 0.526

Shilliday F, Gancedo-Rodrigo M, George G, Aibara S, Adhikari S, Ashraf SN, Barrey EJ, Centrella PA, Crowther D, Dickson P, Gikunju D, Guie MA, Guilinger JP, Gunnarsson A, Harding HP, Hupp CD, Jetson R, Keefe AD, Kim JM, Lewis RJ, Maia de Oliveira T, Le-Marshall J, Narayanan U, Nugai KA, Petrovic D, Rivers E, Ron D, Stringfellow D, Syson K, Ward L, Yeoman JTS, Yu Y, Zhang Y, Zyryanova A, Baker DJ, Breccia P, Linley JE

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-72688-y Pubmed: 42091608 ]

EMD-52456
Download Map
3D View
Amyloid fibril of TTR
CryoEM
Release date: Nov. 5, 2025
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 9hx3
Q-score: 0.544

Aibara S, Kassner A, Wong E, Klingel K, Papworth M, Althage M, Wang QD, Correia C, Milting H, de Oliveira TM

Nat Commun (2025) 16 pp. 9276-9276 [ DOI: doi:10.1038/s41467-025-64902-0 Pubmed: 41115976 ]

EMD-52457
Download Map
3D View
Amyloid fibril of apolipoprotein A-IV
CryoEM
Release date: Nov. 5, 2025
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 9hx4
Q-score: 0.524

Aibara S, Kassner A, Wong E, Klingel K, Papworth M, Althage M, Wang QD, Correia C, Milting H, de Oliveira TM

Nat Commun (2025) 16 pp. 9276-9276 [ DOI: doi:10.1038/s41467-025-64902-0 Pubmed: 41115976 ]

EMD-53087
Download Map
3D View
Overall map of the transcribing Pol II-DSIF-SPT6-U1 snRNP complex
CryoEM
Release date: July 9, 2025
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9qeq
Q-score: 0.255

Zhang L, Batters C, Aibara S, Gordiyenko Y, Zumer K, Schmitzova J, Maier K, Cramer P, Zhang S

Nat Commun (2025) 16 pp. 5823-5823 [ Pubmed: 40595577 DOI: doi:10.1038/s41467-025-60979-9 ]

EMD-53088
Download Map
3D View
Focused refined map of SPT6 in the EC-DSIF-SPT6-U1 snRNP complex
CryoEM
Release date: July 9, 2025
Resolution: 6.2 Å
EM Method: Single-particle

Zhang L, Batters C, Aibara S, Gordiyenko Y, Zumer K, Schmitzova J, Maier K, Cramer P, Zhang S

Nat Commun (2025) 16 pp. 5823-5823 [ Pubmed: 40595577 DOI: doi:10.1038/s41467-025-60979-9 ]

EMD-53089
Download Map
3D View
Focused refined map of U1 snRNP in the EC-DSIF-SPT6-U1 snRNP complex
CryoEM
Release date: July 9, 2025
Resolution: 7.2 Å
EM Method: Single-particle

Zhang L, Batters C, Aibara S, Gordiyenko Y, Zumer K, Schmitzova J, Maier K, Cramer P, Zhang S

Nat Commun (2025) 16 pp. 5823-5823 [ Pubmed: 40595577 DOI: doi:10.1038/s41467-025-60979-9 ]

EMD-51039
Download Map
3D View
Translation-initiation state of human mitochondrial ribosome small subunit State G
CryoEM
Release date: April 23, 2025
Resolution: 3.1 Å
EM Method: Single-particle

Heinrichs M, Finke AF, Aibara S, Krempler A, Boshnakovska A, Rehling P, Hillen HS, Richter-Dennerlein R

Nat Commun (2025) 16 pp. 3641-3641 [ Pubmed: 40240327 DOI: doi:10.1038/s41467-025-58827-x ]

EMD-51042
Download Map
3D View
Translation-initiation state of human mitochondrial ribosome small subunit State G
CryoEM
Consensus map
Release date: April 23, 2025
Resolution: 3.1 Å
EM Method: Single-particle

Heinrichs M, Finke AF, Aibara S, Krempler A, Boshnakovska A, Rehling P, Hillen HS, Richter-Dennerlein R

Nat Commun (2025) 16 pp. 3641-3641 [ Pubmed: 40240327 DOI: doi:10.1038/s41467-025-58827-x ]

EMD-51043
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3D View
Translation-initiation state of human mitochondrial ribosome small subunit State E
CryoEM
Release date: April 23, 2025
Resolution: 3.6 Å
EM Method: Single-particle

Heinrichs M, Finke AF, Aibara S, Krempler A, Boshnakovska A, Rehling P, Hillen HS, Richter-Dennerlein R

Nat Commun (2025) 16 pp. 3641-3641 [ Pubmed: 40240327 DOI: doi:10.1038/s41467-025-58827-x ]

EMD-51045
Download Map
3D View
Translation-initiation state of human mitochondrial ribosome small subunit State E
Consensus map
CryoEM
Release date: April 23, 2025
Resolution: 3.3 Å
EM Method: Single-particle

Heinrichs M, Finke AF, Aibara S, Krempler A, Boshnakovska A, Rehling P, Hillen HS, Richter-Dennerlein R

Nat Commun (2025) 16 pp. 3641-3641 [ Pubmed: 40240327 DOI: doi:10.1038/s41467-025-58827-x ]

Sort by: Download
Showing 1 - 10 of 120. Page 1 of 12
Display:
Statistics
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Filter By

Current Database

  • EMDB [119]
  • EMPIAR [1]

Current status

  • REL [120]

Sample type

  • Complex [116]
  • Protein [56]
  • Ligand [48]
  • RNA [27]
  • DNA [19]
  • Cellular component [2]
  • Sample [1]

Organism

  • Homo sapiens [84]
  • Synthetic construct [17]
  • Sus scrofa [12]
  • Saccharomyces cerevisiae [10]
  • Sus scrofa [10]
  • Human mastadenovirus c [9]
  • Spinacia oleracea [6]
  • Neurospora crassa [4]
  • Staphylococcus aureus [2]
  • Neurospora crassa [2]
  • Unidentified adenovirus [1]
  • Saccharomyces cerevisiae [1]
  • Trypanosoma brucei [1]
  • Trichoplusia ni [1]

EM Method

  • Single-particle [117]
  • Helical reconstruction [2]

Resolution

  • ≥ 2Å and < 3Å [22]
  • ≥ 3Å and < 4Å [70]
  • ≥ 4Å and < 5Å [14]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [9]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 50-100 kDa [2]
  • 250-500 kDa [4]
  • 500-1000 kDa [8]
  • 1-2 MDa [25]
  • 2-5 MDa [15]

Release Date

  • 2026 [1]
  • 2025 [44]
  • 2023 [2]
  • 2022 [1]
  • 2021 [42]
  • 2020 [16]
  • 2019 [1]
  • 2018 [3]
  • 2017 [7]
  • 2016 [3]

Author by name

  • Aibara S [120]
  • Cramer P [44]
  • Boshnakovska A [39]
  • Finke AF [39]
  • Heinrichs M [39]
  • Hillen HS [39]
  • Krempler A [39]
  • Rehling P [39]
  • Richter-dennerlein R [39]
  • Schilbach S [33]
  • Amunts A [24]
  • Dienemann C [16]
  • Forsberg BO [13]
  • Lindahl E [13]
  • Singh V [11]
  • Grabbe F [10]
  • Modelska A [9]
  • Kimanius D [8]
  • Howard RJ [7]
  • Mortezaei N [7]
  • Zhang S [7]
  • Paul B [6]
  • Agafonov DE [4]
  • Luhrmann R [4]
  • Tobiasson V [4]
  • Vos SM [4]
  • Andrell J [3]
  • Bai XC [3]
  • Barrientos A [3]
  • Batters C [3]
  • Boerema AP [3]
  • Del Olio S [3]
  • Flygaard RK [3]
  • Gordiyenko Y [3]
  • Hassan A [3]
  • Itoh Y [3]
  • Izumikawa K [3]
  • Luehrmann R [3]
  • Maier K [3]
  • Naschberger A [3]
  • Nobe Y [3]
  • Rorbach J [3]
  • Schmitzova J [3]
  • Taoka M [3]
  • Wallden K [3]
  • Whitford PC [3]
  • Zhang L [3]
  • Zumer K [3]
  • Althage M [2]
  • Barford D [2]
  • Bashan A [2]
  • Basu A [2]
  • Brown A [2]
  • Chang L [2]
  • Correia C [2]
  • Kassner A [2]
  • Klingel K [2]
  • Li Q [2]
  • Matzov D [2]
  • Milting H [2]
  • Oliveira TM [2]
  • Papworth M [2]
  • Perez Borema A [2]
  • Ramakrishnan V [2]
  • Rathore S [2]
  • Rengachari S [2]
  • Wang QD [2]
  • Wong E [2]
  • Yang J [2]
  • Yap MF [2]
  • Yonath AE [2]
  • Zhang Z [2]
  • Zimmerman E [2]
  • De Oliveira Tm [2]
  • Adami V [1]
  • Adhikari S [1]
  • Ambrosini C [1]
  • Ashraf SN [1]
  • Baker DJ [1]
  • Baradaran R [1]
  • Barrey EJ [1]
  • Bigalke JM [1]
  • Breccia P [1]
  • Broso F [1]
  • Buccarelli M [1]
  • Centrella PA [1]
  • Crowther D [1]
  • D Alessandris Qg [1]
  • Dahl G [1]
  • Dickson P [1]
  • Dorbeus S [1]
  • Fianu I [1]
  • Gahura O [1]
  • Gancedo-rodrigo M [1]
  • George G [1]
  • Giannetti S [1]
  • Gikunju D [1]
  • Gordon E [1]
  • Guida M [1]
  • Guie MA [1]

Author by ORCID

  • Schilbach S [33]
  • Rehling P [32]
  • Finke AF [32]
  • Richter-dennerlein R [32]
  • Hillen HS [32]
  • Boshnakovska A [32]
  • Cramer P [31]
  • Aibara S [31]
  • Amunts A [20]
  • Singh V [11]
  • Modelska A [9]
  • Forsberg BO [9]
  • Zhang S [7]
  • Howard RJ [6]
  • Tobiasson V [4]
  • Agafonov DE [4]
  • Vos SM [4]
  • Taoka M [3]
  • Nobe Y [3]
  • Whitford PC [3]
  • Itoh Y [3]
  • Barrientos A [3]
  • Boerema AP [3]
  • Rorbach J [3]
  • Hassan A [3]
  • Paul B [3]
  • Andrell J [3]
  • Zumer K [3]
  • Zhang L [3]
  • Batters C [3]
  • Rathore S [2]
  • Wang QD [2]
  • Brown A [2]
  • Bai XC [2]
  • Ramakrishnan V [2]
  • Basu A [2]
  • De Oliveira Tm [2]
  • Yap MF [2]
  • Baker DJ [1]
  • Zhang Y [1]
  • Ricci-vitiani L [1]
  • Crowther D [1]
  • Ambrosini C [1]
  • Lewis RJ [1]
  • Adami V [1]
  • Broso F [1]
  • Petrovic D [1]
  • Dienemann C [1]
  • Gahura O [1]
  • Ron D [1]
  • Soldano A [1]
  • Re A [1]
  • Sandmark J [1]
  • Bigalke JM [1]
  • Sighel D [1]
  • Ward L [1]
  • Baradaran R [1]
  • Rosatti EF [1]
  • Roth R [1]
  • Harding HP [1]
  • Fianu I [1]
  • Zikova A [1]
  • Dickson P [1]
  • Shilliday F [1]
  • Gancedo-rodrigo M [1]
  • Buccarelli M [1]
  • Maia De Oliveira T [1]
  • Quattrone A [1]
  • Notarangelo M [1]
  • Rengachari S [1]
  • Keefe AD [1]
  • Stringfellow D [1]

Journal

  • NAT COMMUN [57]
  • NATURE [22]
  • CELL [10]
  • ELIFE [8]
  • NUCLEIC ACIDS RES [4]
  • SCIENCE [4]
  • BIORXIV [3]
  • IUCRJ [3]
  • NAT PLANTS [3]
  • NAT STRUCT MOL BIOL [2]
  • PNAS [2]
  • CELL REP [1]
  • COMMUN BIOL [1]
  • EMBO J [1]
  • J STRUCT BIOL [1]
  • SCI ADV [1]

Software

  • RELION [63]
  • CRYOSPARC [42]
  • WARP [7]
  • GCTF [2]

Microscope

  • FEI TITAN KRIOS [90]
  • TFS KRIOS [21]
  • FEI TALOS ARCTICA [4]
  • FEI POLARA 300 [2]
  • FEI TITAN [2]

Electron Source

  • FIELD EMISSION GUN [119]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [64]
  • GATAN K2 SUMMIT 4K X 4K [24]
  • FEI FALCON II 4K X 4K [12]
  • GATAN K3 6K X 4K [8]
  • GATAN K2 QUANTUM 4K X 4K [6]
  • FEI FALCON IV 4K X 4K [2]
  • FEI FALCON III 4K X 4K [1]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]
  • TFS FALCON 4I 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - SINGLE FRAME [1]

External links

  • PDB [119]
  • AlphaFold DB [56]
  • PDBe-Kb [56]
  • UniProt [56]
  • InterPro [53]
  • Gene Ontology [52]
  • Pfam [52]
  • ChEBI [47]
  • DrugBank [47]
  • ChEMBL [46]
  • Complex Portal [24]
  • SCOP2 [8]
  • EMPIAR [3]
  • CATH [2]
  • EMDB [1]