DAC Accession Contact Person Email Access Information
EGAC00001000177 Lin Li lilin@genomics.cn http://www.ebi.ac.uk/ega/dacs/EGAC00001000177

This DAC controls 5 datasets:

Dataset Accessionsort descending Technology Samples Description
EGAD00001001006 Illumina HiSeq 2000; 234 Dataset for whole exome sequencing of 113 pairs of tumor and normal DNA samples along with 8 cell lines.
EGAD00001001037 Illumina HiSeq 2000; 188 A total of 395 couples were subjected to IVF-PGD treatment, including 129 couples with NGS-based test and 266 couples with SNP array based test for the detection of embryonic chromosomal abnormalities. The NGS test was performed using low coverage whole genome sequencing with HiSeq 2000 platform. And the SNP array test was using Affymetrix Gene Chip Mapping Nsp I 262K. The average age of patients was 32.1 years (age range 20-44 years).
EGAD00001001397 Illumina Genome Analyzer II;, Illumina HiSeq 2000; 72 We sequenced 292 patients who were suffering NSCLC with Whole genome sequencing or Exome sequencing method.
EGAD00001001398 Illumina Genome Analyzer II;, Illumina HiSeq 2000; 147 We sequenced 205 patients who were suffering NSCLC with Exome sequencing method.
EGAD00001001691 Illumina HiSeq 2000; 208 Esophageal cancer is one of the most aggressive cancers and the sixth leading cause of cancer death worldwide1. Approximately 70% of the global esophageal cancers occur in China and over 90% histopathological forms of this disease are esophageal squamous cell carcinoma (ESCC)2-3. Currently, there are limited clinical approaches for early diagnosis and treatment for ESCC, resulting in a 10% 5-year survival rate for the patients. Meanwhile, the full repertoire of genomic events leading to the pathogenesis of ESCC remains unclear. Here we show a comprehensive genomic analysis in 158 ESCC cases, as part of the International Cancer Genome Consortium (ICGC) Research Projects (http://icgc.org/icgc/cgp/72/371/1001734). We conducted whole-genome sequencing in 14 ESCC cases and whole-exome sequencing in 90 cases.

DAC description