EGAC00001000153

EGAC00001000153

DAC Accession Contact Person Email Access Information
EGAC00001000153 Joseph Costello jcostello@cc.ucsf.edu http://www.ebi.ac.uk/ega/dacs/EGAC00001000153

This DAC controls 14 datasets:

Dataset Accessionsort descending Technology Samples Description
EGAD00001000714 102
EGAD00001000777 16 Dataset contains MeDIP-Seq, MRE-Seq and H3K4me3 ChIP-Seq data on 5 GBM patients.
EGAD00001001305 9 Dataset contains WES data from 3 astrocytoma patients: blood as control, primary tumor and recurrent tumor
EGAD00001001359 6 Dataset contains Exome-seq and RNA-seq from 2 GBM patients, as well as RNA-seq from the derived cultured cells (GNS).
EGAD00001001613 10
EGAD00001001614 26
EGAD00001001615 10
EGAD00001001616 2
EGAD00001003763 15 15 whole exome sequencing datasets from five patients. Data is provided as bam files. Libraries were generated using the SeqCap EZ Exome v3.0 kit and sequenced on an Illumina sequencer
EGAD00001003764 4 Four RNA-sequencing datasets from two patients with initial low-grade glioma and copy number alteration at IDH1 upon recurrence. Data is provided as bam files.
EGAD00001003795 15 This dataset includes Nimblegen SeqCap EZ Exome v3 data for each lesion of three patients with multicentric glioma. For two patients, each lesion was sequenced along with whole blood. For a third patient, 3 pieces from the right lesion and 4 pieces from the left were sequenced along with whole blood. In each case BAM files that have been aligned with BWA mem alignment are available.
EGAD00010000827 1 Illumina Infinium 450K array data
EGAD00010000829 70 Illumina Infinium 450K array data
EGAD00010001408 Illumina 450K 34 Illumina Infinium 450K array data

DAC description