EGAC00001000145

EGAC00001000145

DAC Accession Contact Person Email Access Information
EGAC00001000145 Søren Vang vang@clin.au.dk http://www.ebi.ac.uk/ega/dacs/EGAC00001000145

This DAC controls 24 datasets:

Dataset Accessionsort descending Technology Samples Description
EGAD00001000711 Illumina HiSeq 2000; 42
EGAD00001000712 Illumina HiSeq 2000; 72
EGAD00001000713 Illumina HiSeq 2000; 12
EGAD00001000829 Illumina HiSeq 2000; 16
EGAD00001000830 Illumina HiSeq 2000; 14
EGAD00001000831 Illumina HiSeq 2000; 30
EGAD00001000832 Illumina HiSeq 2000; 16
EGAD00001000833 Illumina HiSeq 2000; 10
EGAD00001000834 Illumina HiSeq 2000; 20
EGAD00001000835 Illumina HiSeq 2000; 8
EGAD00001001939 Illumina HiSeq 2000; 476 Mapped whole transcriptome RNA-Seq data from 476 human samples of early stage urothelial carcinoma.
EGAD00001001940 Illumina HiSeq 2000; 476 Un-mapped whole transcriptome RNA-Seq data from 476 human samples of early stage urothelial carcinoma.
EGAD00001001941 476 Variants derived from mapped whole transcriptome RNA-Seq data from 476 human samples of early stage urothelial carcinoma.
EGAD00001002716 Illumina HiSeq 2000;ILLUMINA 122 In this study we characterized genomic alterations in two to five metachronous bladder tumors from 29 patients initially diagnosed with early stage disease. Fourteen patients (32 tumors) had non progressive disease (NPD) and 15 patients (34 tumors) had progressive disease (PD). Whole exome sequencing (WES, ~50x mean read depth and whole transcriptome RNA-seq was performed (RNA was not advalible for 4 tumors) Data provided here consist of 122 Bam files for WES (83 Tumors and 39 blood)
EGAD00001002717 Illumina HiSeq 2000;ILLUMINA 71 In this study we characterized genomic alterations in two to five metachronous bladder tumors from 29 patients initially diagnosed with early stage disease. Fourteen patients (32 tumors) had non progressive disease (NPD) and 15 patients (34 tumors) had progressive disease (PD). Whole exome sequencing (WES, ~50x mean read depth and whole transcriptome RNA-seq was performed (RNA was not advalible for 4 tumors). Data provided here consist of 71 unmapped Bam files form whole transcriptome RNA-seq.

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