DAC Accession Contact Person Email Access Information
EGAC00001000064 Dr. Graziella Bosco

This DAC controls 23 datasets:

Dataset Accessionsort descending Technology Samples Description
EGAD00001000703 Illumina Genome Analyzer IIx; 29 SCLC - Whole genome sequencing data Publication Peifer et al., 2012, Nature Genetics
EGAD00001000716 Illumina HiSeq 2000; 25 RNAseq data, Publication Fernandez-Cuesta et al., 2014, CD74-NRG1 fusions in lung adenocarcinoma
EGAD00001000746 Illumina HiSeq 2000; 25 Fernandez-Cuesta et al., RNAseq data Pipline
EGAD00001000795 Illumina HiSeq 2000; 69 Fernandez-Cuesta et al, 2014, Nature Communication, RNA Sequencing data set
EGAD00001000813 Illumina HiSeq 2000; 29 Fernandez-Cuesta et al., 2014, Nature Communication, Whole genome sequencing was performed using a read length of 2x100 bp for all samples. On average, 110 Gb of sequence were produced per sample, aiming a mean coverage of 30x for both tumour and matched normal.
EGAD00001000820 Illumina HiSeq 2000; 15 Fernandez-Cuesta et al, 2014, Nature Communication, Whole exome sequencing data set
EGAD00001000977 Illumina HiSeq 2000;ILLUMINA, Illumina HiSeq 2000; 11 WGS dataset LCNEC study
EGAD00001001244 Illumina HiSeq 2000; 59 RNA-sequencing (RNA-seq) was performed with RNA extracted from fresh-frozen human tumor tissue samples. cDNA libraries were prepared from poly-A selected RNA applying the Illumina TruSeq protocol for mRNA. The libraries were then sequenced with a 2 x 100bp paired-end protocol to a minimum mean coverage of 30x of the annotated transcriptome.
EGAD00001001273 Illumina HiSeq 2000; 100 Whole genome sequencing was performed with DNA extracted from fresh-frozen tumor and normal material. Short insert DNA libraries were prepared with the TruSeq DNA PCRfree sample preparation kit (Illumina) for paired-end sequencing at a minimum read length of 2x100bp. Human DNA libraries were sequenced to an average coverage of minimum 30x for both tumor and matched normal. Murine DNA libraries of tumor and matched normal were both sequenced to a coverage of 25x.
EGAD00001001431 Illumina HiSeq 2000; 15 SCLC - RNA sequencing data Publication Peifer et al., 2012, Nature Genetics
EGAD00001003099 Illumina HiSeq 2000;ILLUMINA 14 RNAseq data set (Mollaoglu et al., MYC drives progression of small cell lung cancer to a variant neuroendocrine subtype with vulnerability to Aurora kinase inhibition)
EGAD00001003316 Illumina HiSeq 2000;ILLUMINA 1 RNAseq of LC2AD with AD80 or DMSO Plenker et al., Mechanistic insight into RET kinase inhibitors targeting the DFG-out conformation in RET-rearranged cancer
EGAD00001003464 Illumina HiSeq 2000;ILLUMINA 3 For RNA-Seq total RNA was isolated following LDC67 or JQ1 treatment. 3’RNAseq libraries were prepared with QUANT SEQ FWD 3´mRNA-Seq Kit (Lexogen, Austria), sequenced on an Illumina HiSeq 4000
EGAD00001003801 Illumina HiSeq 2000;ILLUMINA 40 RNAseq Data set
EGAD00001003815 Illumina HiSeq 2000;ILLUMINA 48 Whole exome sequencing


DAC description