DAC Accession Contact Person Email Access Information
EGAC00001000044 PCGP Steering Committee PCGP_data_request@stjude.org http://www.ebi.ac.uk/ega/dacs/EGAC00001000044

This DAC controls 84 datasets:

Dataset Accessionsort ascending Technology Samples Description
EGAD00010001319 Illumina Infinium HumanMethylation450 BeadChip 345 Medulloblastoma methylation profiling
EGAD00010001300 Affymetrix expression array 146 Medulloblastoma expression profiling
EGAD00010000698 0 PCGP INF ALL SNP6
EGAD00010000696 0 PCGP ETP ALL SNP6
EGAD00010000598 1724 PCGP Ph-likeALL SNP6
EGAD00010000596 837 PCGP Ph-likeALL GEA
EGAD00010000462 Affymetrix_U133v2 75 SJLGG Case samples using Gene Expression Array
EGAD00001003905 Illumina HiSeq 2000;ILLUMINA 66 RNA-Seq files accompanying the paper titled "Somatic Histone H3 Mutations in Diffuse Intrinsic Pontine Gliomas and Non-Brainstem Paediatric Glioblastomas".
EGAD00001003782 Illumina HiSeq 2000;ILLUMINA 43 When available (25 primary MDS, 12 MDS/MPN, and 6 AML-MRC cases), high quality RNA (stranded-total) was submitted for RNA-seq. RNA was extracted from bulk myeloid cells which was used as the tumor population. Files uploaded are mapped BAM files.
EGAD00001003781 Illumina HiSeq 2000;ILLUMINA 94 Paired whole exome sequencing for 32 primary MDS, 14 MDS/MPN, and 8 AML-MRC cases (total = 54). Normal comparator genomic DNA was extracted from lymphocytes purified by flow cytometry. Bulk myeloid cells were used as a source of tumor gDNA. Files uploaded are mapped BAM files.
EGAD00001003435 Illumina HiSeq 2000;ILLUMINA 150 Whole Genome Sequencing for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors"
EGAD00001003434 Illumina HiSeq 2000;ILLUMINA 149 Whole Exome Sequencing for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors"
EGAD00001003433 Illumina HiSeq 2000;ILLUMINA 95 RNA-Seq data for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors"
EGAD00001003432 Illumina HiSeq 2000;ILLUMINA 20 ChIP-Seq data for the paper titled "Orthotopic Patient-Derived Xenografts of Pediatric Solid Tumors"
EGAD00001003412 Illumina HiSeq 2000;ILLUMINA 152

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