CHEBI:28098 - kanamycin B

Main ChEBI Ontology Automatic Xrefs Reactions Pathways Models
ChEBI Name kanamycin B
ChEBI ID CHEBI:28098
Stars This entity has been manually annotated by the ChEBI Team.
Secondary ChEBI IDs CHEBI:6107, CHEBI:14489, CHEBI:24948, CHEBI:24949
Supplier Information
Download Molfile XML SDF
Formula C18H37N5O10
Net Charge 0
Average Mass 483.51390
Monoisotopic Mass 483.254
InChI InChI=1S/C18H37N5O10/c19-2-6-11(26)12(27)9(23)17(30-6)32-15-4(20)1-5(21)16(14(15)29)33-18-13(28)8(22)10(25)7(3-24)31-18/h4-18,24-29H,1-3,19-23H2/t4-,5+,6+,7+,8-,9+,10+,11+,12+,13+,14-,15+,16-,17+,18+/m0/s1
InChIKey SKKLOUVUUNMCJE-FQSMHNGLSA-N
SMILES NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O[C@H]3O[C@H](CO)[C@@H](O)[C@H](N)[C@H]3O)[C@H]2O)[C@H](N)[C@@H](O)[C@@H]1O
Roles Classification
Biological Role(s): antimicrobial agent
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
(via carbohydrate-containing antibiotic )
View more via ChEBI Ontology
ChEBI Ontology
Outgoing kanamycin B (CHEBI:28098) is a kanamycins (CHEBI:24951)
kanamycin B (CHEBI:28098) is conjugate base of kanamycin B(5+) (CHEBI:58549)
Incoming 3''-deamino-3''-hydroxykanamycin B (CHEBI:72990) has functional parent kanamycin B (CHEBI:28098)
N6'-acetylkanamycin B (CHEBI:18142) has functional parent kanamycin B (CHEBI:28098)
arbekacin (CHEBI:37922) has functional parent kanamycin B (CHEBI:28098)
bekanamycin sulfate (CHEBI:31255) has functional parent kanamycin B (CHEBI:28098)
dibekacin (CHEBI:37945) has functional parent kanamycin B (CHEBI:28098)
tobramycin (CHEBI:28864) has functional parent kanamycin B (CHEBI:28098)
kanamycin (CHEBI:6104) has part kanamycin B (CHEBI:28098)
kanamycin B(5+) (CHEBI:58549) is conjugate acid of kanamycin B (CHEBI:28098)
IUPAC Name
(1R,2S,3S,4R,6S)-4,6-diamino-3-(3-amino-3-deoxy-α-D-glucopyranosyloxy)-2-hydroxycyclohexyl 2,6-diamino-2,6-dideoxy-α-D-glucopyranoside
Synonyms Sources
2'-amino-2'-deoxykanamycin ChemIDplus
Bekanamycin KEGG COMPOUND
Kanamycin B KEGG COMPOUND
Nebramycin factor 5 KEGG COMPOUND
Nebramycin V ChemIDplus
O-3-amino-3-deoxy-α-D-glucopyranosyl-(1→4)-O-(2,6-diamino-2,6-dideoxy-α-D-glucopyranosyl-(1→6))-2-deoxy-D-streptamine ChemIDplus
Manual Xrefs Databases
1520 DrugCentral
9CS PDBeChem
C00018692 KNApSAcK
C00825 KEGG COMPOUND
D07497 KEGG DRUG
View more database links
Registry Numbers Types Sources
4696-76-8 CAS Registry Number ChemIDplus
61646 Beilstein Registry Number Beilstein
Last Modified
22 February 2017
General Comment
2004-06-15 Kanamycin B is a minor component of the naturally occurring antibiotic complex known as kanamycin.