CHEBI:51898 - C5-indocyanine

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ChEBI Name C5-indocyanine ChEBI ID CHEBI:51898 Definition A C5 cyanine dye having 1-ethyl-3,3-dimethylindoleinine units at each end. Stars This entity has been manually annotated by the ChEBI Team. Supplier Information Download Molfile XML SDF Find compounds which contain this structure Find compounds which resemble this structure Take structure to the Advanced Search Formula C29H35N2.I Net Charge 0 Average Mass 538.50615 Monoisotopic Mass 538.18449 InChI InChI=1S/C29H35N2.HI/c1-7-30-24-18-14-12-16-22(24)28(3,4)26(30)20-10-9-11-21-27-29(5,6)23-17-13-15-19-25(23)31(27)8-2;/h9-21H,7-8H2,1-6H3;1H/q+1;/p-1 InChIKey IWHSKYHCPUDDMY-UHFFFAOYSA-M SMILES [I-].[H]C(=C([H])C([H])=C1N(CC)c2ccccc2C1(C)C)C([H])=C([H])C1=[N+](CC)c2ccccc2C1(C)C Roles Classification Application(s): fluorochrome A fluorescent dye used to stain biological specimens. dye (via cyanine dye ) View more via ChEBI Ontology ChEBI Ontology Outgoing C5-indocyanine (CHEBI:51898) has part C5-indocyanine cation (CHEBI:52807) C5-indocyanine (CHEBI:51898) has role fluorochrome (CHEBI:51217) C5-indocyanine (CHEBI:51898) is a Cy5 dye (CHEBI:37989) C5-indocyanine (CHEBI:51898) is a organic iodide salt (CHEBI:50356) IUPAC Name 1-ethyl-2-[5-(1-ethyl-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene)penta-1,3-dien-1-yl]-3,3-dimethyl-3H-indolium iodide Synonyms Sources C5_DI (C5-di-indolenine) ChEBI Indodicarbocyanine (C5)dye ChEBI Last Modified 24 July 2009