CHEBI:52101 - lissamine rhodamine

Main ChEBI Ontology Automatic Xrefs Reactions Pathways Models
ChEBI Name lissamine rhodamine
ChEBI ID CHEBI:52101
Definition An organic sodium salt having 4-[3,6-bis(diethylamino)xanthenium-9-yl]benzene-1,3-disulfonate as the counterion.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information
Download Molfile XML SDF
Formula C27H29N2O7S2.Na
Net Charge 0
Average Mass 580.650
Monoisotopic Mass 580.13139
InChI InChI=1S/C27H30N2O7S2.Na/c1-5-28(6-2)18-9-12-21-24(15-18)36-25-16-19(29(7-3)8-4)10-13-22(25)27(21)23-14-11-20(37(30,31)32)17-26(23)38(33,34)35;/h9-17H,5-8H2,1-4H3,(H-,30,31,32,33,34,35);/q;+1/p-1
InChIKey SXQCTESRRZBPHJ-UHFFFAOYSA-M
SMILES [Na+].CCN(CC)C1=CC2=[O+]C3=C(C=CC(=C3)N(CC)CC)C(=C2C=C1)C1=C(C=C(C=C1)S([O-])(=O)=O)S([O-])(=O)=O
Roles Classification
Application(s): fluorochrome
A fluorescent dye used to stain biological specimens.
histological dye
A dye used in microscopic or electron microscopic examination of cells and tissues to give contrast and to highlight particular features of interest, such as nuclei and cytoplasm.
fluorescent probe
A role played by a fluorescent molecular entity used to study the microscopic environment by fluorescence spectroscopy.
View more via ChEBI Ontology
ChEBI Ontology
Outgoing lissamine rhodamine (CHEBI:52101) has part lissamine rhodamine anion (CHEBI:52866)
lissamine rhodamine (CHEBI:52101) has role fluorescent probe (CHEBI:39442)
lissamine rhodamine (CHEBI:52101) has role fluorochrome (CHEBI:51217)
lissamine rhodamine (CHEBI:52101) has role histological dye (CHEBI:77178)
lissamine rhodamine (CHEBI:52101) is a organic sodium salt (CHEBI:38700)
IUPAC Name
sodium 4-[3,6-bis(diethylamino)xanthenium-9-yl]benzene-1,3-disulfonate
Synonyms Sources
Acid Red 52 ChemIDplus
Acid Red XB ChemIDplus
Acid Rhodamine B ChemIDplus
Amido Rhodamine B ChemIDplus
C.I. 45100 ChEBI
Food Red 106 ChemIDplus
Kiton Rhodamine B ChemIDplus
lissamine rhodamine B ChEBI
Sulforhodamine B ChemIDplus
Xylene Red B ChemIDplus
Manual Xref Database
C20348 KEGG COMPOUND
View more database links
Registry Number Type Source
3520-42-1 CAS Registry Number ChemIDplus
Citations Waiting for Citations Types Sources
15117968 PubMed citation Europe PMC
16150799 PubMed citation Europe PMC
8853462 PubMed citation Europe PMC
Last Modified
24 September 2020