5-(hydroxymethyl)cytosine (CHEBI:76792)

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ChEBI Name	5-(hydroxymethyl)cytosine

ChEBI ID	CHEBI:76792

Definition	A nucleobase analogue that is cytosine in which the hydrogen at position 5 is replaced by a hydroxymethyl group.

Stars	This entity has been manually annotated by the ChEBI Team.

Submitter	Bruce May

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Formula

C5H7N3O2

Net Charge

Average Mass

141.12800

Monoisotopic Mass

141.05383

InChI

InChI=1S/C5H7N3O2/c6-4-3(2-9)1-7-5(10)8-4/h1,9H,2H2,(H3,6,7,8,10)

InChIKey

RYVNIFSIEDRLSJ-UHFFFAOYSA-N

SMILES

Nc1nc(=O)[nH]cc1CO

Roles Classification
Chemical Role(s):	Bronsted base A molecular entity capable of accepting a hydron from a donor (Bronsted acid). (via organic amino compound )

Biological Role(s):	mouse metabolite Any mammalian metabolite produced during a metabolic reaction in a mouse (Mus musculus). human metabolite Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens).

ChEBI Ontology
Outgoing	5-(hydroxymethyl)cytosine (CHEBI:76792) has functional parent cytosine (CHEBI:16040) 5-(hydroxymethyl)cytosine (CHEBI:76792) has role human metabolite (CHEBI:77746) 5-(hydroxymethyl)cytosine (CHEBI:76792) has role mouse metabolite (CHEBI:75771) 5-(hydroxymethyl)cytosine (CHEBI:76792) is a aminopyrimidine (CHEBI:38338) 5-(hydroxymethyl)cytosine (CHEBI:76792) is a aromatic primary alcohol (CHEBI:33857) 5-(hydroxymethyl)cytosine (CHEBI:76792) is a nucleobase analogue (CHEBI:67142) 5-(hydroxymethyl)cytosine (CHEBI:76792) is a pyrimidone (CHEBI:38337)

Incoming	5-(β-D-glucosylmethyl)cytosine (CHEBI:131616) has functional parent 5-(hydroxymethyl)cytosine (CHEBI:76792)

IUPAC Name

4-amino-5-(hydroxymethyl)pyrimidin-2(1H)-one

Synonyms	Sources
4-Amino-5-(hydroxymethyl)-2(1H)-pyrimidinone	ChemIDplus
5-hydroxymethylcytosine	ChEBI

Last Modified

30 March 2016