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> Main
CHEBI:87042 - seldomycin 5
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ChEBI Ontology
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ChEBI Name
seldomycin 5
ChEBI ID
CHEBI:87042
Definition
An aminoglycoside antibiotic that is part of an antimicrobial complex consisting of factors 1,2,3,5 from a soil isolate named
Streptomyces hofunensis
.
Stars
This entity has been manually annotated by the ChEBI Team.
Submitter
Charles Parker
Supplier Information
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Formula
C18H38N6O7
Net Charge
0
Average Mass
450.53030
Monoisotopic Mass
450.28020
InChI
InChI=1S/C18H38N6O7/c1-
27-
10-
5-
28-
17(13(24)
12(10)
23)
30-
15-
7(20)
3-
8(21)
16(14(15)
26)
31-
18-
11(22)
9(25)
2-
6(4-
19)
29-
18/h6-
18,25-
26H,2-
5,19-
24H2,1H3/t6-
,7+,8-
,9-
,10+,11+,12-
,13+,14+,15-
,16+,17+,18+/m0/s1
InChIKey
HJKXMQLJTKUBMG-BAOVJYBRSA-N
SMILES
CO[C@@H]
1CO[C@H]
(O[C@H]
2[C@H]
(N)
C[C@H]
(N)
[C@@H]
(O[C@H]
3O[C@H]
(CN)
C[C@H]
(O)
[C@H]
3N)
[C@@H]
2O)
[C@H]
(N)
[C@H]
1N
Roles Classification
Biological Role
(s):
bacterial metabolite
Any prokaryotic metabolite produced during a metabolic reaction in bacteria.
antimicrobial drug
A drug used to treat or prevent microbial infections.
antimicrobial agent
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
(via
carbohydrate-containing antibiotic
)
Application
(s):
antimicrobial drug
A drug used to treat or prevent microbial infections.
View more via ChEBI Ontology
ChEBI Ontology
Outgoing
seldomycin 5 (
CHEBI:87042
)
has role
antimicrobial drug (
CHEBI:36043
)
seldomycin 5 (
CHEBI:87042
)
has role
bacterial metabolite (
CHEBI:76969
)
seldomycin 5 (
CHEBI:87042
)
is a
amino cyclitol glycoside (
CHEBI:22479
)
seldomycin 5 (
CHEBI:87042
)
is a
aminoglycoside antibiotic (
CHEBI:22507
)
IUPAC Name
(1
R
,2
R
,3
S
,4
R
,6
S
)-
4,6-
diamino-
3-
[(2,3-
diamino-
2,3-
dideoxy-
4-
O
-
methyl-
α-
D
-
xylopyranosyl)oxy]-
2-
hydroxycyclohexyl 2,6-
diamino-
2,4,6-
trideoxy-
α-
D
-
xylo
-
hexopyranoside
Manual Xref
Database
US4189569
Patent
View more database links
Registry Number
Type
Source
75635-18-6
CAS Registry Number
ChemIDplus
Citation
Type
Source
838631
PubMed citation
Europe PMC
Last Modified
31 July 2015