CHEBI:87042 - seldomycin 5

Main ChEBI Ontology Automatic Xrefs Reactions Pathways Models
ChEBI Name seldomycin 5
ChEBI ID CHEBI:87042
Definition An aminoglycoside antibiotic that is part of an antimicrobial complex consisting of factors 1,2,3,5 from a soil isolate named Streptomyces hofunensis.
Stars This entity has been manually annotated by the ChEBI Team.
Submitter Charles Parker
Supplier Information
Download Molfile XML SDF
Formula C18H38N6O7
Net Charge 0
Average Mass 450.53030
Monoisotopic Mass 450.28020
InChI InChI=1S/C18H38N6O7/c1-27-10-5-28-17(13(24)12(10)23)30-15-7(20)3-8(21)16(14(15)26)31-18-11(22)9(25)2-6(4-19)29-18/h6-18,25-26H,2-5,19-24H2,1H3/t6-,7+,8-,9-,10+,11+,12-,13+,14+,15-,16+,17+,18+/m0/s1
InChIKey HJKXMQLJTKUBMG-BAOVJYBRSA-N
SMILES CO[C@@H]1CO[C@H](O[C@H]2[C@H](N)C[C@H](N)[C@@H](O[C@H]3O[C@H](CN)C[C@H](O)[C@H]3N)[C@@H]2O)[C@H](N)[C@H]1N
Roles Classification
Biological Role(s): bacterial metabolite
Any prokaryotic metabolite produced during a metabolic reaction in bacteria.
antimicrobial drug
A drug used to treat or prevent microbial infections.
antimicrobial agent
A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans.
(via carbohydrate-containing antibiotic )
Application(s): antimicrobial drug
A drug used to treat or prevent microbial infections.
View more via ChEBI Ontology
ChEBI Ontology
Outgoing seldomycin 5 (CHEBI:87042) has role antimicrobial drug (CHEBI:36043)
seldomycin 5 (CHEBI:87042) has role bacterial metabolite (CHEBI:76969)
seldomycin 5 (CHEBI:87042) is a amino cyclitol glycoside (CHEBI:22479)
seldomycin 5 (CHEBI:87042) is a aminoglycoside antibiotic (CHEBI:22507)
IUPAC Name
(1R,2R,3S,4R,6S)-4,6-diamino-3-[(2,3-diamino-2,3-dideoxy-4-O-methyl-α-D-xylopyranosyl)oxy]-2-hydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-α-D-xylo-hexopyranoside
Manual Xref Database
US4189569 Patent
View more database links
Registry Number Type Source
75635-18-6 CAS Registry Number ChemIDplus
Citation Waiting for Citations Type Source
838631 PubMed citation Europe PMC
Last Modified
31 July 2015