CHEBI:77178 - histological dye

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ChEBI Name histological dye
ChEBI ID CHEBI:77178
Definition A dye used in microscopic or electron microscopic examination of cells and tissues to give contrast and to highlight particular features of interest, such as nuclei and cytoplasm.
Stars This entity has been manually annotated by the ChEBI Team.
Members of histological dye Class Download as Tab-delimited, XML, SDF
victoria blue R
Mass :458.038
Formula : C29H32ClN3
alkali blue 4B
Mass :555.624
Formula : C32H26N3NaO3S
alkali Blue G
Mass :533.642
Formula : C32H27N3O3S
acid fuchsin
Mass :585.53800
Formula : C20H17N3Na2O9S3
acid red 26
Mass :480.42200
Formula : C18H14N2Na2O7S2
new fuchsin free base
Mass :329.439
Formula : C22H23N3
benzo scarlet 4BNS
Mass :938.80200
Formula : C38H25N6Na3O13S3
aniline blue WS
Definition : A dye that is a mixture of methyl blue and water blue. Used for staining collagen in Masson's trichrome and Mallory's method for connective tissue.
methyl blue
Mass :799.80000
Formula : C37H27N3Na2O9S3
mauveine
Definition : A mixture comprising four closely related phenazine derivatives mauveine A, mauveine B, mauveine B2 and mauveine C. A violet coloured dye.
auramine O
Mass :303.83000
Formula : C17H21N3.HCl C17H22ClN3
auramine O free base
Mass :267.36886
Formula : C17H21N3
mauveine C
Mass :419.54020
Formula : C28H27N4
mauveine B2
Mass :405.51370
Formula : C27H25N4
mauveine B
Mass :405.51370
Formula : C27H25N4
mauveine A
Mass :391.48710
Formula : C26H23N4
fast red B
Mass :467.43000
Formula : C17H13N3O9S2
fast blue salt B
Mass :475.49200
Formula : C14H12Cl4N4O2Zn
fast blue B
Mass :268.26960
Formula : C14H12N4O2
Evans blue
Mass :960.80500
Formula : C34H24N6Na4O14S4
Sirius red F3B
Mass :1373.079
Formula : C45H26N10Na6O21S6
thioflavine S
Definition : Thioflavin S is a homogenous mixture of compounds that results from the methylation of dehydrothiotoluidine in the presence of sulfonic acid. It is used to stain amyloid plaques.
Durazol blue 4R
Mass :859.750
Formula : C34H24N5Na3O12S3
Sirius red F3B (acid form)
Mass :1241.188
Formula : C45H32N10O21S6
Durazol blue 4R (acid form)
Mass :793.804
Formula : C34H27N5O12S3
ethyl green
Mass :516.944
Formula : C27H35BrClN3
Fast green FCF
Mass :808.852
Formula : C37H34N2Na2O10S3
gallein
Mass :364.306
Formula : C20H12O7
safranin O
Mass :350.850
Formula : C20H19N4.Cl
3,7-diamino-2,8-dimethyl-5-phenylphenazin-5-ium
Mass :315.399
Formula : C20H19N4
fast yellow
Mass :401.32600
Formula : C12H9N3Na2O6S2
lissamine rhodamine
Mass :580.650
Formula : C27H29N2O7S2.Na
Biebrich scarlet
Mass :556.47900
Formula : C22H14N4Na2O7S2
Biebrich scarlet (acid form)
Mass :512.51500
Formula : C22H16N4O7S2
woodstain scarlet
Mass :556.47900
Formula : C22H14N4Na2O7S2
eosin b
Mass :624.05726
Formula : C10H8Br2N2O9.2Na
phloxine B
Mass :829.63400
Formula : C20H2Br4Cl4Na2O5
azocarmine B
Mass :681.62400
Formula : C28H17N3Na2O9S3
naphthol yellow S
Mass :358.19200
Formula : C10H4N2Na2O8S
flavianic acid
Mass :314.22800
Formula : C10H6N2O8S
lissamine flavine FF
Mass :404.37200
Formula : C19H13N2NaO5S
2,4-dinitro-1-naphthol
Mass :234.16500
Formula : C10H6N2O5
metanil yellow
Mass :375.37700
Formula : C18H14N3NaO3S
pararosaniline
Mass :323.820
Formula : C19H18ClN3
Gallamin blue
Mass :335.743
Formula : C15H14ClN3O4
indigo carmine (acid form)
Mass :422.392
Formula : C16H10N2O8S2
primuline
Mass :475.543
Formula : C21H14N3NaO3S3
primuline (acid form)
Mass :453.561
Formula : C21H15N3O3S3
pyronin B
Mass :358.906
Formula : C21H27ClN2O
acridine red 3B free base
Mass :238.285
Formula : C15H14N2O
pyronin B-FeCl3 complex
Mass :521.110
Formula : C21H27Cl4FeN2O
pyronin Y
Mass :302.799
Formula : C17H19ClN2O
Sudan III
Mass :352.389
Formula : C22H16N4O
lissamine fast red
Mass :524.438
Formula : C18H14N4Na2O8S2
lissamine fast red (acid form)
Mass :480.475
Formula : C18H16N4O8S2
lissamine fast yellow
Mass :551.291
Formula : C16H10Cl2N4Na2O7S2
Luxol fast blue MBS
Mass :1214.831
Formula : C62H50CuN14O6S2
Luxol fast blue MBS (acid form)
Mass :736.198
Formula : C32H16CuN8O6S2
beta-aminoorcein
Mass :484.501
Formula : C28H24N2O6
gamma-aminoorcein
Mass :484.501
Formula : C28H24N2O6
gamma-hydroxyorcein
Mass :485.486
Formula : C28H23NO7
beta-aminoorceimine
Mass :483.524
Formula : C28H25N3O5
gamma-aminoorceimine
Mass :483.524
Formula : C28H25N3O5
crocin-1
Mass :976.96460
Formula : C44H64O24
trypan blue
Mass :960.80500
Formula : C34H24N6Na4O14S4 C34H24N6O14S4.4Na
nile red
Mass :318.370
Formula : C20H18N2O2
chromoxane cyanin R free acid
Mass :470.44900
Formula : C23H18O9S
3,3'-diaminobenzidine
Mass :214.267
Formula : C12H14N4
iodonitrotetrazolium chloride
Mass :505.69600
Formula : C19H13ClIN5O2
iodine green
Mass :472.494
Formula : C27H35Cl2N3
Milling yellow 3G
Mass :584.987
Formula : C23H18ClN4NaO7S2
Milling yellow 3G (free acid)
Mass :563.006
Formula : C23H19ClN4O7S2
orcein
Definition : A variable mixture of several compounds isolated from lichens, the eight most abundant being alpha-aminoorcein, alpha-hydroxyorcein, beta-aminoorcein, gamma-aminoorcein, beta-hydroxyorcein, gamma-hydroxyorcein, beta-aminoorceimine and beta-aminoorceimine (all are phenoxazine-based). It is used for the demonstration of elastic fibres as well as to stain the rough endoplasmic reticulum of hepatitis B infected liver cells.
alpha-aminoorcein
Mass :362.379
Formula : C21H18N2O4
alpha-hydroxyorcein
Mass :363.364
Formula : C21H17NO5
beta-hydroxyorcein
Mass :485.486
Formula : C28H23NO7
naphthol green B
Mass :878.46100
Formula : C30H15FeN3Na3O15S3
crystal violet
Mass :407.97900
Formula : C25H30ClN3
eosin YS dye
Mass :691.85400
Formula : C20H6Br4Na2O5
tartrazine
Mass :534.36300
Formula : C16H9N4Na3O9S2 C16H9N4O9S2.3Na
rose bengal
Mass :1049.85300
Formula : C20H2Cl4I4K2O5
acid red 29
Mass :468.36900
Formula : C16H10N2Na2O8S2
acid red 44
Mass :502.42800
Formula : C20H12N2Na2O7S2
anthracene blue SWR
Mass :304.20850
Formula : C14H8O8
alizarin red S
Mass :342.25600
Formula : C14H7NaO7S
haematoxylin
Mass :302.27876
Formula : C16H14O6
hematein
Mass :300.263
Formula : C16H12O6
indigo carmine
Mass :466.356
Formula : C16H8N2Na2O8S2 C16H8N2O8S2.2Na
gallocyanin
Mass :336.728
Formula : C15H13ClN2O5
gallocyanin(1+)
Mass :301.275
Formula : C15H13N2O5
Gallamin blue(1+)
Mass :300.290
Formula : C15H14N3O4
Methyl violet 2B
Mass :379.926
Formula : C23H26ClN3
Methyl violet 2B free base
Mass :343.466
Formula : C23H25N3
Guinee green B
Mass :690.807
Formula : C37H35N2NaO6S2
azocarmine G
Mass :579.57900
Formula : C28H18N3NaO6S2
Sirius scarlet GG
Mass :373.361
Formula : C15H16N3NaO5S
Sirius scarlet GG (acid form)
Mass :351.379
Formula : C15H17N3O5S
pararosaniline free base
Mass :287.35840
Formula : C19H17N3
rosanilin
Mass :337.847
Formula : C20H20ClN3
rosanilin free base
Mass :301.386
Formula : C20H19N3
magenta II
Mass :351.873
Formula : C21H22ClN3
magenta II free base
Mass :315.412
Formula : C21H21N3
water blue
Mass :737.720
Formula : C32H25N3O9S3.Na.Na
brilliant cresyl blue
Mass :771.929
Formula : C34H40Cl4N6O2Zn
brilliant green
Mass :482.637
Formula : C27H34N2O4S
brilliant green cation
Mass :385.565
Formula : C27H33N2
nuclear fast red
Mass :357.272
Formula : C14H8NNaO7S
nuclear fast red free acid
Mass :335.290
Formula : C14H9NO7S
carminic acid
Mass :492.389
Formula : C22H20O13
Celestin blue B
Mass :363.796
Formula : C17H18ClN3O4
Sirius red 4B
Mass :675.603
Formula : C29H19N5Na2O8S2
Sirius red 4B (acid form)
Mass :631.639
Formula : C29H21N5O8S2
thionine
Mass :263.74600
Formula : C12H10ClN3S
merbromin
Mass :750.660
Formula : C20H8Br2HgNa2O6 C20H8Br2HgO6.2Na
2,7-dibromo-4-hydroxymercurifluorescein
Mass :706.697
Formula : C20H10Br2HgO6
Amido Black 10B
Mass :616.49100
Formula : C22H14N6Na2O9S2
4-amino-5-hydroxy-3-[(p-nitrophenyl)azo]-6-(phenylazo)-naphthalene-2,7-disulfonate
Mass :570.51200
Formula : C22H14N6O9S2
Amido Black 10B (acid form)
Mass :572.52700
Formula : C22H16N6O9S2
azophloxine
Mass :509.42100
Formula : C18H13N3Na2O8S2
Oil red O
Mass :408.496
Formula : C26H24N4O
osmium tetroxide
Mass :254.222
Formula : O4Os
Sudan black B
Mass :456.542
Formula : C29H24N6
FluoZin-3
Mass :694.590
Formula : C34H28F2N2O12
Ponceau S
Mass :760.574
Formula : C22H12N4Na4O13S4
Ponceau S (acid form)
Mass :672.647
Formula : C22H16N4O13S4
acridine orange free base
Mass :265.35290
Formula : C17H19N3
acridine orange
Mass :301.81362
Formula : C17H19N3.ClH C17H20ClN3
acridine red 3B
Mass :274.746
Formula : C15H15ClN2O
3,6-diamino-10-methylacridinium chloride
Mass :259.73400
Formula : C14H14ClN3
alcian yellow
Mass :838.01300
Formula : C40H46Cl2N8S4
alcian yellow cation
Mass :767.10600
Formula : C40H46N8S4
ethyl eosin
Mass :714.03400
Formula : C22H11Br4KO5
orange G
Mass :452.36900
Formula : C16H10N2Na2O7S2
new fuchsin
Mass :365.900
Formula : C22H24ClN3
methylene green
Mass :364.851
Formula : C16H17ClN4O2S
acid green 5
Mass :792.84800
Formula : C37H34N2Na2O9S3
malachite green
Mass :364.91100
Formula : C23H25ClN2
azure A
Mass :291.79900
Formula : C14H14ClN3S
azure B
Mass :305.82600
Formula : C15H16ClN3S
azure C
Mass :277.77200
Formula : C13H12ClN3S
victoria blue 4R
Mass :520.10700
Formula : C34H34ClN3
Pontamine sky blue 5B
Mass :992.810
Formula : C34H24N6Na4O16S4
Pontamine sky blue 5B (acid form)
Mass :904.882
Formula : C34H28N6O16S4
Chrome fast yellow 8GL
Mass :472.338
Formula : C19H10N2Na2O8S
Chrome fast yellow 8GL (acid form)
Mass :428.374
Formula : C19H12N2O8S
Congo corinth
Mass :697.651
Formula : C32H21N5Na2O7S2
Congo corinth (acid form)
Mass :653.688
Formula : C32H23N5O7S2
Hoffman's violet
Mass :422.006
Formula : C26H32ClN3
Hoffman's violet free base
Mass :385.545
Formula : C26H31N3
methylene blue
Mass :319.85200
Formula : C16H18N3S.Cl
nile blue A
Mass :353.84500
Formula : C20H20ClN3O
night blue
Mass :562.18700
Formula : C37H40ClN3
tolonium chloride
Mass :305.82600
Formula : C15H16ClN3S
methyl green
Mass :458.46600
Formula : C26H33Cl2N3
victoria blue B
Mass :506.08000
Formula : C33H32ClN3
Bismark brown Y
Mass :419.31100
Formula : C18H20Cl2N8
basic brown 1
Mass :346.38910
Formula : C18H18N8
basic fuchsin
Definition : A four-component mixture of chemically related dyes comprising pararosanilin, rosanilin, magenta II and new fuchsin in varying amounts
lissamine fast yellow (acid form)
Mass :507.328
Formula : C16H12Cl2N4O7S2
3,4-dihydroxy-9,10-dioxo-9,10-dihydroanthracene-2-sulfonic acid
Mass :320.27400
Formula : C14H8O7S
alizarin cyanin BBS
Mass :508.29900
Formula : C14H6Na2O14S2
1,3,4,5,7,8-hexahydroxy-9,10-dioxo-9,10-dihydroanthracene-2,6-disulfonic acid
Mass :464.33500
Formula : C14H8O14S2
chromoxane cyanin R
Mass :536.39400
Formula : C23H15Na3O9S
purpurin
Mass :256.21032
Formula : C14H8O5
chrome violet CG
Mass :488.28660
Formula : C22H11Na3O9
aurintricarboxylic acid
Mass :422.34120
Formula : C22H14O9
aluminon
Mass :473.43270
Formula : C22H23N3O9
phenosafranine
Mass :322.79136
Formula : C18H15ClN4
3,7-diamino-5-phenylphenazin-5-ium
Mass :287.339
Formula : C18H15N4
ethyl violet
Mass :492.139
Formula : C31H42ClN3
ethyl violet cation
Mass :456.686
Formula : C31H42N3
rhodamine B
Mass :479.01000
Formula : C28H31ClN2O3
thioflavine T
Mass :318.866
Formula : C17H19ClN2S
Sudan IV
Mass :380.443
Formula : C24H20N4O
naphthalene blue black CS
Mass :718.540
Formula : C22H13N6Na3O12S3
naphthalene blue black CS (acid form)
Mass :652.595
Formula : C22H16N6O12S3
brazilin
Mass :286.27936
Formula : C16H14O5
brazilein
Mass :284.264
Formula : C16H12O5
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