CHEBI:51217 - fluorochrome

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ChEBI Name fluorochrome
ChEBI ID CHEBI:51217
Definition A fluorescent dye used to stain biological specimens.
Stars This entity has been manually annotated by the ChEBI Team.
Members of fluorochrome Class Download as Tab-delimited, XML, SDF
EVOblue-30 dye
Mass :447.50500
Formula : C21H25N3O6S
Fluo-3
Mass :769.53448
Formula : C36H30Cl2N2O13
Fluo-4
Mass :736.62589
Formula : C36H30F2N2O13
Fluo-4FF
Mass :758.58023
Formula : C35H26F4N2O13
Fluo-5N
Mass :767.59680
Formula : C35H27F2N3O15
Fluo-5F
Mass :740.58977
Formula : C35H27F3N2O13
FM 1-43 dye
Mass :611.53800
Formula : C30H49Br2N3
ethyl eosin
Mass :714.03400
Formula : C22H11Br4KO5
lissamine rhodamine
Mass :580.650
Formula : C27H29N2O7S2.Na
BoBo-3
Mass :1254.73234
Formula : C45H58I4N6S2
C5-indocyanine
Mass :538.50615
Formula : C29H35N2.I
diIC18(7) dye
Mass :1013.39390
Formula : C63H101IN2
C3-oxacyanine
Mass :460.30810
Formula : C21H21IN2O2
DRAQ5 dye
Mass :412.48210
Formula : C22H28N4O4
DY-675
Mass :706.89052
Formula : C42H46N2O6S
BODIPY 630/650-X
Mass :660.49641
Formula : C33H31BF2N4O6S
BODIPY FL
Mass :292.08899
Formula : C14H15BF2N2O2
cascade yellow
Mass :563.53646
Formula : C27H21N3O9S
BODIPY TMR-X
Mass :608.44077
Formula : C31H35BF2N4O6
BODIPY TR-X
Mass :634.45913
Formula : C31H29BF2N4O6S
BODIPY 650/665-X
Mass :643.44509
Formula : C33H32BF2N5O6
C3-thiacarbocyanine
Mass :492.43900
Formula : C21H21IN2S2
C545T
Mass :430.56292
Formula : C26H26N2O2S
DY-676
Mass :808.93400
Formula : C42H45N2NaO9S2
fort orange 600
Definition : A nanocrystalline fluorescent dye with an emission wavelength of 600 nm.
5-(N-hexadecanoyl)aminofluorescin
Mass :585.72970
Formula : C36H43NO6
hemo red 720
Definition : A nanocrystalline cadmium telluride fluorescent dye with an emission wavelength of 720 nm.
hops yellow 560
Definition : A quantum dot fluorescent dye with an emission wavelength of 560 nm.
Ir(Cn)2(acac)
Mass :984.13000
Formula : C47H47IrN6O6
Ir(Cs)2(acac)
Mass :990.17700
Formula : C45H41IrN4O6S2
Lake Placid 490
Definition : A nanocrystalline fluorescent dye with an emission wavelength of 490 nm.
magnesium orange G
Mass :574.81700
Formula : C16H10MgN2O7S2.8H2O C16H26MgN2O15S2
maple red-orange 620
Definition : A nanocrystalline fluorescent dye with an emission wavelength of 620 nm.
perylenediimide
Mass :390.34720
Formula : C24H10N2O4
Qdot 525
Definition : A quantum dot fluorescent dye with an emission wavelength of 524 nm.
DY-520XL
Mass :514.59100
Formula : C26H30N2O7S
2-(5'-chloro-2'-phosphoryloxyphenyl)-6-chloro-4-(3H)-quinazolinone
Mass :387.11100
Formula : C14H9Cl2N2O5P
eosin YS dye
Mass :691.85400
Formula : C20H6Br4Na2O5
ER-Tracke Blue-White DPX dye
Mass :580.52600
Formula : C26H21F5N4O4S
Yo-Pro-3(2+)
Mass :401.54380
Formula : C26H31N3O
YoYo-1(4+)
Mass :763.02380
Formula : C49H58N6O2
YoYo-3(4+)
Mass :811.06660
Formula : C53H58N6O2
1,6-diphenylhexatriene
Mass :232.31964
Formula : C18H16
2',7'-dichlorofluorescein
Mass :401.19580
Formula : C20H10Cl2O5
C5-oxacyanine
Mass :486.34540
Formula : C23H23IN2O2
C7-indocyanine
Mass :564.54330
Formula : C31H37IN2
C7-oxacyanine
Mass :512.38270
Formula : C25H25IN2O2
calcein
Mass :622.53312
Formula : C30H26N2O13
zinc phthalocyanine
Mass :577.91336
Formula : C32H16N8Zn
zinc tetramesitylporphyrin
Mass :846.42904
Formula : C56H52N4Zn
zinc tetraphenylporphyrin
Mass :678.11008
Formula : C44H28N4Zn
YoYo-3
Mass :1318.68474
Formula : C53H58I4N6O2
YoYo-1
Mass :1270.64194
Formula : C49H58I4N6O2
Yo-Pro-1
Mass :629.31550
Formula : C24H29I2N3O
epicocconone
Mass :410.41658
Formula : C23H22O7
magnesium octaethylporphyrin
Mass :557.068
Formula : C36H44MgN4 C36H44MgN4
magnesium tetraphenylporphyrin
Mass :637.027
Formula : C44H28MgN4 C44H28MgN4
magnesium phthalocyanine
Mass :536.82836
Formula : C32H16MgN8
DAPI
Mass :277.32380
Formula : C16H15N5
2'-(4-ethoxyphenyl)-5-(4-methylpiperazin-1-yl)-2,5'-bibenzimidazole
Mass :452.55106
Formula : C27H28N6O
Qdot 565
Definition : A quantum dot fluorescent dye with an emission wavelength of 564 nm.
Qdot 585
Definition : A quantum dot fluorescent dye with an emission wavelength of 585 nm.
Qdot 605
Definition : A quantum dot fluorescent dye with an emission wavelength of 604 nm.
Qdot 655
Definition : A quantum dot fluorescent dye with an emission wavelength of 654 nm.
Qdot 705
Definition : A quantum dot fluorescent dye with an emission wavelength of 706 nm.
Qdot 800
Definition : A quantum dot fluorescent dye with an emission wavelength of 799 nm.
rhodamine green
Definition : A xanthene dye of absorption wavelength 497 nm and emission wavelength 523 nm.
rhodamine green 5-isomer
Mass :375.35420
Formula : C21H15N2O5
rhodamine green 6-isomer
Mass :375.35420
Formula : C21H15N2O5
rhodamine red-X
Mass :671.82400
Formula : C33H41N3O8S2
snake-eye red 900
Definition : A nanocrystalline cadmium telluride fluorescent dye with an emission wavelength of 878 nm.
squarylium dye III
Mass :320.38500
Formula : C20H20N2O2
4-(4-diethylaminostyryl)-1-methylpyridinium iodide
Mass :394.29310
Formula : C18H23IN2
succinyl-Leu-Leu-Val-Tyr-7-amino-4-methylcoumarin
Mass :763.87630
Formula : C40H53N5O10
topaz
Definition : A nanocrystalline fluorescent dye.
tris(4,7-diphenyl-1,10-phenanthroline)ruthenium(II)
Mass :1098.26000
Formula : C72H48N6Ru
X-rhod-1
Mass :1228.09300
Formula : C60H67BrN4O19
yakima yellow phosphoramidite
Mass :1014.79100
Formula : C48H61Cl4N2O11P
cryptocyanin cation
Mass :353.47940
Formula : C25H25N2
dithiazanine
Mass :391.57200
Formula : C23H23N2S2
acridine orange cation
Mass :266.36080
Formula : C17H20N3
acridine yellow cation
Mass :238.30760
Formula : C15H16N3
Alexa Fluor 480(3-)
Mass :531.44900
Formula : C21H11N2O11S2
Alexa Fluor 430(1-)
Mass :599.55300
Formula : C26H26F3N2O9S
ATTO 465-2(1+)
Mass :296.34370
Formula : C17H18N3O2
ATTO 495-2(1+)
Mass :352.45000
Formula : C21H26N3O2
ATTO 520-2(1+)
Mass :367.46140
Formula : C22H27N2O3
ATTO 565 meta-isomer
Mass :611.03862
Formula : C31H31ClN2O9
ATTO 565 meta-isomer(1+)
Mass :511.58820
Formula : C31H31N2O5
ATTO 590 para-isomer(1+)
Mass :577.68940
Formula : C36H37N2O5
ATTO 590 para-isomer
Mass :677.14000
Formula : C36H37ClN2O9
ATTO 565 para-isomer(1+)
Mass :511.58820
Formula : C31H31N2O5
Alexa Fluor 488 para-isomer(2-)
Mass :532.45700
Formula : C21H12N2O11S2
Alexa Fluor 488 meta-isomer(2-)
Mass :532.45700
Formula : C21H12N2O11S2
Alexa Fluor 610-X(2-)
Mass :1080.42200
Formula : C46H45Cl3N4O14S3
calcium green 1(6-)
Mass :912.59100
Formula : C43H27Cl2N3O16
magnesium orange G(2-)
Mass :550.51200
Formula : C16H10N2O7S2.8H2O C16H26N2O15S2
FM 4-64 dye
Mass :663.61300
Formula : C34H53Br2N3
fura red
Mass :944.86800
Formula : C41H44N4O20S
nile blue perchlorate
Mass :417.84300
Formula : C20H20ClN3O5
nile red
Mass :318.370
Formula : C20H18N2O2
DY-677
Mass :925.00600
Formula : C43H46N2Na2O12S3
DY-678
Mass :1027.05100
Formula : C43H45N2Na3O15S4
DY-680
Mass :634.82632
Formula : C36H46N2O6S
DY-681
Mass :736.87000
Formula : C36H45N2NaO9S2
DY-682
Mass :852.94200
Formula : C37H46N2Na2O12S3
DY-700
Mass :668.84254
Formula : C39H44N2O6S
DY-701
Mass :770.88600
Formula : C39H43N2NaO9S2
4-dimethylamino-4'-nitrostilbene
Mass :268.31052
Formula : C16H16N2O2
5-carboxyfluorescein
Mass :376.31578
Formula : C21H12O7
5(6)-carboxy-2',7'-dichlorofluorescein
5-chloromethylfluorescein diacetate
Mass :464.85098
Formula : C25H17ClO7
biphenylacetylene
Mass :178.22920
Formula : C14H10
5-carboxy-X-rhodamine
Mass :534.60170
Formula : C33H30N2O5
dithiazanine iodide
Mass :518.47867
Formula : C23H23N2S2.I C23H23N2S2.I
Yo-Pro-3
Mass :655.35280
Formula : C26H31I2N3O
terrylendiimide
Mass :834.99680
Formula : C58H46N2O4
tetramethylrhodamine chloride
Mass :422.90400
Formula : C24H23ClN2O3
6,8-difluoro-7-hydroxy-4-methylcoumarin
Mass :212.150
Formula : C10H6F2O3
7-methoxycoumarin-4-acetic acid
Mass :234.20480
Formula : C12H10O5 C12H10O5
8-benzyloxy-5,7-diphenylquinoline
Mass :387.47248
Formula : C28H21NO
9,10-bis(phenylethynyl)anthracene
Mass :378.46392
Formula : C30H18
9,10-diphenylanthracene
Mass :330.42110
Formula : C26H18
FUN-1
Mass :528.83600
Formula : C24H18ClIN2S
calcium crimson
Mass :1368.39200
Formula : C65H69N5O24S2
Alexa Fluor 430
Mass :701.75100
Formula : C32H42F3N3O9S
5-carboxy-X-rhodamine triethylammonium salt
Mass :635.79170
Formula : C39H45N3O5
(CS)2Ir(mu-Cl)2Ir(CS)2
Mass :1740.83200
Formula : C72H52Cl2Ir2N8O8S4
5-carboxytetramethylrhodamine
Mass :430.45260
Formula : C25H22N2O5
6-carboxyrhodamine 6G
Mass :523.02000
Formula : C29H31ClN2O5
6-carboxy-2',4,4',5'7,7'-hexachlorofluorescein succinimidyl ester
Mass :680.05800
Formula : C25H9Cl6NO9
fura-2 dye
Mass :819.97750
Formula : C28H22K5N3O14
ATTO 590 meta-isomer(1+)
Mass :591.71600
Formula : C37H39N2O5
ATTO 610-2(1+)
Mass :391.52580
Formula : C25H31N2O2
ATTO 635-2(1+)
Mass :431.58970
Formula : C28H35N2O2
BoBo-1(4+)
Mass :695.03800
Formula : C41H54N6S2
BoBo-3(4+)
Mass :747.11200
Formula : C45H58N6S2
C3-indocyanine cation
Mass :385.56430
Formula : C27H33N2
C5-oxacyanine cation
Mass :359.44090
Formula : C23H23N2O2
C3-thiacarbocyanine cation
Mass :365.53500
Formula : C21H21N2S2
C5-indocyanine cation
Mass :411.60160
Formula : C29H35N2
C3-oxacyanine cation
Mass :333.40360
Formula : C21H21N2O2
C7-indocyanine cation
Mass :437.63890
Formula : C31H37N2
C7-oxacyanine cation
Mass :385.47820
Formula : C25H25N2O2
cresyl violet
Mass :262.28600
Formula : C16H12N3O
4-(4-dihexadecylaminostyryl)-N-methylpyridium
Mass :660.13290
Formula : C46H79N2
2-[4-(dimethylamino)styryl]-1-methylpyridinium
Mass :239.33550
Formula : C16H19N2
dilC18(5)(1+)
Mass :860.45220
Formula : C61H99N2
dilC18(3)(1+)
Mass :834.41490
Formula : C59H97N2
diOC18(3)(1+)
Mass :782.25420
Formula : C53H85N2O2
diIC18(7)(1+)
Mass :886.48940
Formula : C63H101N2
DY-631(1-)
Mass :713.88100
Formula : C36H45N2O9S2
DY-633(1-)
Mass :727.90700
Formula : C37H47N2O9S2
DY-636(1-)
Mass :737.90200
Formula : C38H45N2O9S2
DY-651(1-)
Mass :765.95500
Formula : C40H49N2O9S2
DY-676(1-)
Mass :785.94500
Formula : C42H45N2O9S2
DY-681(1-)
Mass :713.88100
Formula : C36H45N2O9S2
rhodamine 6G
Mass :479.01000
Formula : C28H31ClN2O3 C28H31N2O3.Cl
pibenzimol
Mass :424.49770
Formula : C25H24N6O
LoLo-1 dye
Mass :1462.54100
Formula : C47H54Br2I4N8S2
4-(4-dihexadecylaminostyryl)-N-methylpyridium iodide
Mass :787.03730
Formula : C46H79IN2 C46H79N2.I
dilC18(5) dye
Mass :959.90300
Formula : C61H99ClN2O4
dilC18(3) dye
Mass :933.86500
Formula : C59H97ClN2O4
propidium
Mass :414.58582
Formula : C27H34N4
ethidium
Mass :314.40372
Formula : C21H20N3
DY-480XL
Mass :514.59100
Formula : C26H30N2O7S
DY-485XL
Mass :502.58000
Formula : C25H30N2O7S
thiazole orange
Mass :476.61000
Formula : C26H24N2O3S2
DY-731(1-)
Mass :739.91800
Formula : C38H47N2O9S2
DY-701(1-)
Mass :747.89700
Formula : C39H43N2O9S2
DY-751(1-)
Mass :791.99200
Formula : C42H51N2O9S2
DY-776(1-)
Mass :811.98200
Formula : C44H47N2O9S2
2',4',5',7'-tetrabromofluorescein(2-)
Mass :645.87500
Formula : C20H6Br4O5
thionine acetate
Mass :287.33700
Formula : C14H13N3O2S
To-Pro-1
Mass :645.38100
Formula : C24H29I2N3S
cryptocyanin
Mass :480.38395
Formula : C25H25N2.I
To-Pro-3
Mass :671.41800
Formula : C26H31I2N3S
ToTo-1
Mass :1302.77300
Formula : C49H58I4N6S2
ToTo-3
Mass :1378.86900
Formula : C55H62I4N6S2
CHOxAsH-bis(1,2-ethanedithiol)
Mass :629.28400
Formula : C17H12As2Cl2O4S4
Alexa Fluor 350
Mass :410.35500
Formula : C16H14N2O9S
Alexa Fluor 532
Mass :723.77144
Formula : C34H33N3O11S2
ATTO 565
Mass :611.040
Formula : C31H31ClN2O9
BoBo-1
Mass :1202.65778
Formula : C41H54I4N6S2
Alexa Fluor 546
Mass :1080.39800
Formula : C44H46Cl3N4NaO14S3
Alexa Fluor 568
Mass :791.804
Formula : C37H33N3O13S2
coumarin 120
Mass :175.18400
Formula : C10H9NO2
7-amino-4-(trifluoromethyl)coumarin
Mass :229.15539
Formula : C10H6F3NO2
coumarin 480
Mass :255.31172
Formula : C16H17NO2
coumarin 153
Mass :309.28311
Formula : C16H14F3NO2
acridine orange
Mass :301.81362
Formula : C17H19N3.ClH C17H20ClN3
acridine yellow
Mass :273.76046
Formula : C15H15N3.ClH C15H16ClN3
6-carboxy-4',5'-dichloro-2',7'-dimethoxyfluorescein
Mass :505.25800
Formula : C23H14Cl2O9
6-carboxy-2',4,7,7'-tetrachlorofluorescein succinimiyl ester
Mass :611.16800
Formula : C25H11Cl4NO9
adams apple red 680
Definition : A nanocrystalline cadmium telluride fluorescent dye with an emission wavelength of 680 nm.
adirondack green 520
Definition : A nanocrystalline fluorescent dye with an emission wavelength of 520 nm.
Alexa Fluor 480
Mass :552.27200
Formula : C21H11Li3N2O11S2
Alexa Fluor 488
Definition : A fluorescent dye of absorption wavelength 495 nm and emission wavelength 519 nm, derived from a 3,6-diaminoxanthenium-4,5-disulfate.
Alexa Fluor 488 para-isomer
Mass :546.33900
Formula : C21H12Li2N2O11S2
Alexa Fluor 514
Definition : A fluorescent dye of absorption wavelength 517 nm and emission wavelength 542 nm derived from a 3,6-diaminoxanthenium-4,5-disulfate.
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