SAMN31055412
Pseudomonas sorgoleonovorans SO81
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Attributes
| Type |
Value |
| External Id |
SAMN31055412 |
| INSDC center name |
Pacific Northwest National Laboratory |
| INSDC first public |
2022-10-14T00:00:00Z |
| INSDC last update |
2022-10-27T10:29:27.073Z |
| INSDC secondary accession |
SRS15313269 |
| INSDC status |
live |
| NCBI submission model |
MIGS.ba |
| NCBI submission model |
MIGS/MIMS/MIMARKS.plant-associated |
| NCBI submission package |
MIGS.ba.plant-associated.5.0 |
| SRA accession |
SRS15313269 |
| climate_environment |
https://kare.ucanr.edu/Weather_Physical_-_Biological_Data/ |
| collected_by |
Pacific Northwest National Laboratory |
| collection_date |
2021-10-20 |
| depth |
0-30 cm |
| description |
Sequencing of plant-associated microbiome bacterial isolates from rhizosphere soil. |
| elev |
109 m |
| env_broad_scale |
environment associated with a plant part or small plant [ENVO:01001057] |
| env_local_scale |
rhizosphere environment [ENVO:01000999] |
| env_medium |
rhizosphere [ENVO:00005801] | soil [ENVO:00001998] |
| geo_loc_name |
USA: California, Parlier, Kearney Agricultural Research and Extension Center (KARE) |
| host |
Sorghum bicolor |
| host_genotype |
https://phytozome-next.jgi.doe.gov/info/Sbicolor_v3_1_1 |
| host_taxid |
4558 |
| isol_growth_condt |
https://doi.org/10.1073/pnas.1907500116 |
| isolation_source |
rhizosphere and root exudates |
| lat_lon |
36.60 N 119.51 W |
| num_replicons |
1 |
| organism |
Pseudomonas sp. SO81 |
| plant_product |
rhizosphere |
| project_name |
SFA-Secure Biosystems Design: Persistence Control of Engineered Functions in Complex Soil Microbiomes (PerCon SFA) |
| rainfall_regm |
https://kare.ucanr.edu/Weather_Physical_-_Biological_Data/?weather=station&station=39 |
| ref_biomaterial |
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA527782 |
| soil_type |
Sandy loam |
| strain |
SO81 |
| tiss_cult_growth_med |
Liquid enrichment cultures and cultivation assays were performed using either MME medium or MMV medium (with 1x vitamin solution) cultured with variable carbon sources. |
| title |
Whole genome sequencing of Pseudomonas sorgoleonovorans SO81, a potential plant growth promoting microbe (PGPM), derived from Sorghum bicolor rhizosphere soil |
BioSamples record history
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