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Modelling Approach
Organisms
- Saccharomyces cerevisiae (10)
- Schizosaccharomycetaceae (1)
- Cryptococcus neoformans (1)
- Eremothecium gossypii FDAG1 (1)
- Clavispora lusitaniae (1)
- Sporobolomyces roseus (1)
- Sclerotinia sclerotiorum (1)
- Lodderomyces elongisporus (1)
- Trichoderma virens (1)
- Rhodonia placenta (1)
- Zymoseptoria tritici (1)
- Encephalitozoon cuniculi (1)
- Nakaseomyces glabratus (1)
- Botrytis cinerea (1)
- Fusarium graminearum (1)
- 5306 (1)
- Aspergillus fumigatus (1)
- Debaryomyces hansenii (1)
- Histoplasma capsulatum (1)
- Schizosaccharomyces japonicus (1)
- 140110 (1)
- Trichoderma reesei (1)
- Rhizopus arrhizus (1)
- Trichoderma asperellum (1)
- Aspergillus niger (1)
- Mycosarcoma maydis (1)
- Aspergillus terreus (1)
- Fusarium oxysporum (1)
- Aspergillus clavatus (1)
- Kluyveromyces lactis (1)
- Phycomyces blakesleeanus (1)
- Pyricularia grisea (1)
- Aspergillus oryzae (1)
- Coccidioides immitis (1)
- Trichoderma longibrachiatum (1)
- Coprinopsis cinerea (1)
- Aspergillus nidulans FGSC A4 (1)
- Meyerozyma guilliermondii ATCC 6260 (1)
- Candida tropicalis (1)
- Chaetomium globosum (1)
- Trichoderma atroviride (1)
- Trichoderma citrinoviride (1)
- Aspergillus fischeri (1)
- Fusarium verticillioides (1)
- Candida albicans (1)
- Puccinia graminis (1)
- Parastagonospora nodorum (1)
- Uncinocarpus reesii (1)
- Penicillium chrysogenum (1)
- Scheffersomyces stipitis (1)
- Trichoderma harzianum (1)
- Batrachochytrium dendrobatidis (1)
- Laccaria bicolor (1)
- Yarrowia lipolytica (1)
- Schizosaccharomyces pombe (1)
- Komagataella pastoris (1)
- Eukaryota (1)
- Neurospora crassa (1)
- Mammalia (1)
- cellular organisms (1)
- Homo sapiens (1)
Disease
GO
- cell growth (71)
- obsolete cellular metabolic process (56)
- protein catabolic process (9)
- translation (9)
- extracellular region (7)
- ethanol biosynthetic process (6)
- acetate biosynthetic process (6)
- sn-glycerol 3-phosphatase activity (6)
- glucokinase activity (6)
- transporter activity (6)
- acetate transport (6)
- regulation of transport (6)
- trehalose transport (6)
- cellular response to osmotic stress (6)
- regulation of cell size (6)
- GO:0004367 (6)
- glycerol transmembrane transport (6)
- negative regulation of catalytic activity (6)
- positive regulation of catalytic activity (6)
- phosphorylation (6)
- D-glucose import (6)
- trehalose biosynthetic process (6)
- fructose-bisphosphate aldolase activity (6)
- 6-phosphofructokinase activity (6)
- mRNA catabolic process (6)
- glycerol biosynthetic process (6)
- pyruvate biosynthetic process (6)
- glucose-6-phosphate isomerase activity (6)
- cytoplasm (6)
- dephosphorylation (6)
- obsolete cell (6)
- GO:0006350 (5)
- fructose-2,6-bisphosphate 2-phosphatase activity (5)
- 6-phosphofructo-2-kinase activity (5)
- GO:0045941 (5)
- response to osmotic stress (5)
- canonical glycolysis (5)
- intracellular accumulation of glycerol (5)
- GO:0008054 (4)
- anaphase-promoting complex (3)
- cell death (3)
- cell division (2)
- mitotic cell cycle (2)
- negative regulation of cyclin-dependent protein serine/threonine kinase activity (2)
- cyclin-dependent protein kinase holoenzyme complex (2)
- intracellular anatomical structure (2)
- gene expression (2)
- protein dephosphorylation (2)
- protein kinase activity (2)
- protein phosphorylation (2)
- cytokinesis (1)
- spindle checkpoint signaling (1)
- positive regulation of nuclear cell cycle DNA replication (1)
- regulation of DNA-templated DNA replication initiation (1)
- mitotic spindle disassembly (1)
- negative regulation of cell budding (1)
- positive regulation of cell budding (1)
- negative regulation of DNA replication (1)
- exopolyphosphatase activity (1)
- RENT complex (1)
- positive regulation of exit from mitosis (1)
- negative regulation of exit from mitosis (1)
- obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition (1)
- obsolete regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle (1)
- positive regulation of ubiquitin-protein transferase activity (1)
- obsolete positive regulation of protein dephosphorylation (1)
- regulation of G2/M transition of mitotic cell cycle (1)
- peptidyl-tyrosine phosphorylation (1)
- regulation of mitotic cell cycle (1)
- cyclin-dependent protein serine/threonine kinase regulator activity (1)
- cell cycle process (1)
- obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic process (1)
- spindle assembly (1)
- DNA replication initiation (1)
- DNA-templated DNA replication (1)
- cellular response to ATP (1)
- aldehyde dehydrogenase (NAD+) activity (1)
- obsolete pyruvate dehydrogenase activity (1)
- glucose metabolic process (1)
- GTPase activator activity (1)
- GTP binding (1)
- obsolete intracellular part (1)
- GO:0031575 (1)
- obsolete M/G1 transition of mitotic cell cycle (1)
- G1/S transition of mitotic cell cycle (1)
- positive regulation of DNA-templated transcription (1)
- MPF complex (1)
- phosphoprotein phosphatase activity (1)
- immune response to tumor cell (1)
- cyclin-dependent protein serine/threonine kinase activity (1)
- GO:0007092 (1)
- GO:0043624 (1)
- GO:0043623 (1)
- mitotic spindle assembly checkpoint signaling (1)
- cysteine-type endopeptidase inhibitor activity involved in apoptotic process (1)
- tricarboxylic acid cycle (1)
- negative regulation of DNA-binding transcription factor activity (1)
- GO:0044257 (1)
- positive regulation of DNA-binding transcription factor activity (1)
- catabolic process (1)
- cell population proliferation (1)
- alcohol dehydrogenase (NAD+) activity (1)
- DNA-templated transcription (1)
- protein tyrosine phosphatase activity (1)
- glycolytic process (1)
- ATP biosynthetic process (1)
- biological regulation (1)
- regulation of cell cycle (1)
- negative regulation of protein kinase activity (1)
- protein binding (1)
UNIPROT
- Q00055 (6)
- P32485 (6)
- P23900 (6)
- P39932 (6)
- P26309 (3)
- P32943 (2)
- P38698 (2)
- P53197 (2)
- P24869 (2)
- P20438 (2)
- P30283 (2)
- P38634 (2)
- P24868 (2)
- P20437 (2)
- P24871 (1)
- P40957 (1)
- P40958 (1)
- P07866 (1)
- P09119 (1)
- P26448 (1)
- P04551 (1)
- P24870 (1)
- P24865 (1)
- P78972 (1)
- O13286 (1)
- P40380 (1)
- P27636 (1)
- Q00684 (1)
- P47035 (1)
- Q03018 (1)
- P40316 (1)
- P38987 (1)
- P46527 (1)
- Q01094 (1)
- P24941 (1)
- P33306 (1)
- P13365 (1)
- P11938 (1)
- P06400 (1)
- P24864 (1)
- P12830 (1)
- P00546 (1)
- P08153 (1)
- P11746 (1)
- P14635 (1)
- P06493 (1)
- P30304 (1)
- P30291 (1)
- P04821 (1)
- P06700 (1)
CHEBI
- CHEBI:18246 (56)
- HSO3 (56)
- CPD-7033 (56)
- FE+2 (56)
- CHEBI:17810 (56)
- CHEBI52386 (56)
- CHEBI52389 (56)
- CHEBI52615 (56)
- CHEBI52388 (56)
- CPD-7000 (56)
- CHEBI:58608 (56)
- CHEBI:28573 (56)
- CHEBI:74474 (56)
- CHEBI:52329 (56)
- CHEBI:52327 (56)
- CHEBI:52325 (56)
- CHEBI:52328 (56)
- CHEBI:49183 (56)
- CHEBI:48943 (56)
- CHEBI:17909 (56)
- CHEBI:17029 (56)
- CHEBI:62098 (55)
- CHEBI:52897 (55)
- CHEBI:29121 (55)
- CHEBI:71626 (55)
- CHEBI:71627 (55)
- CHEBI:35759 (55)
- CHEBI:57560 (55)
- CHEBI:75061 (55)
- CHEBI:57277 (55)
- CHEBI:76459 (55)
- CHEBI:29067 (55)
- CHEBI:59087 (55)
- CHEBI:57930 (55)
- CHEBI:52603 (55)
- CHEBI:45804 (55)
- CHEBI:15446 (55)
- CHEBI:32362 (55)
- CHEBI:11614 (55)
- CHEBI:58043 (55)
- CHEBI:52385 (55)
- CHEBI:52384 (55)
- CHEBI:52378 (55)
- CHEBI:52377 (55)
- CHEBI:52383 (55)
- CHEBI:52382 (55)
- CHEBI:52380 (55)
- CHEBI:52379 (55)
- CHEBI:52376 (55)
- CHEBI:52375 (55)
- CHEBI:76463 (55)
- CHEBI:76453 (55)
- CHEBI:52975 (55)
- CHEBI:17309 (55)
- CHEBI:62710 (55)
- CHEBI:60412 (55)
- CHEBI:52980 (55)
- CHEBI:53065 (55)
- CHEBI:53064 (55)
- CHEBI:52976 (55)
- CHEBI:13711 (55)
- CHEBI:27512 (55)
- CHEBI:978 (55)
- CHEBI:52966 (55)
- CHEBI:52326 (55)
- CHEBI:52324 (55)
- CHEBI:50577 (55)
- CHEBI:52977 (55)
- CHEBI:61540 (55)
- CHEBI:12886 (55)
- CHEBI:17284 (55)
- CHEBI:46970 (55)
- CHEBI:59080 (55)
- CHEBI:59082 (55)
- CHEBI:59084 (55)
- CHEBI:59092 (55)
- CHEBI:17126 (55)
- CHEBI:52394 (55)
- CHEBI:52321 (55)
- CHEBI:52320 (55)
- CHEBI:50626 (55)
- CHEBI:52393 (55)
- CHEBI:60448 (55)
- CHEBI:52962 (55)
- CHEBI:48945 (55)
- CHEBI:13086 (55)
- CHEBI:16475 (55)
- CHEBI:37671 (55)
- CHEBI:31013 (55)
- CHEBI:28599 (55)
- CHEBI:16480 (55)
- CHEBI:37283 (55)
- CHEBI:27931 (55)
- CHEBI:17411 (55)
- CHEBI:27402 (55)
- CHEBI:18020 (55)
- CHEBI:1463 (55)
- CHEBI:29034 (55)
- CHEBI:29033 (55)
- CHEBI:16863 (55)
- CHEBI:13997 (53)
- CHEBI:12876 (43)
- CHEBI:59871 (34)
- CHEBI:15786 (32)
- CHEBI:17137 (29)
- CHEBI:51972 (26)
- CHEBI:51973 (26)
- CHEBI:30526 (23)
- CHEBI:38846 (19)
- CHEBI:28223 (11)
- CHEBI:18189 (9)
- CHEBI:16236 (7)
- CHEBI:15361 (7)
- CHEBI:17234 (7)
- CHEBI:64833 (6)
- CHEBI:25728 (6)
- CHEBI:23248 (6)
- CHEBI:30089 (6)
- CHEBI:27082 (6)
- CHEBI:17754 (6)
- CHEBI:16905 (6)
- CHEBI:17665 (6)
- CHEBI:28802 (2)
- CHEBI:175901 (1)
- CHEBI:60449 (1)
- CHEBI:62719 (1)
- CHEBI:40480 (1)
- CHEBI:15343 (1)
- CHEBI:16526 (1)
- CHEBI:16908 (1)
Model Flag
Search terms:
Found: 71 models Download Select all |
Lei2001_Yeast_Aerobic_Metabolism
ID: BIOMD0000000245
|
Submitter: Lukas Endler |
Format: SBML |
Uploaded date: 25/03/2010 |
Last modified date:
| Published in: 2001
Conradie2010_RPControl_CellCycle
ID: BIOMD0000000265
|
Submitter: Kieran Smallbone |
Format: SBML |
Uploaded date: 24/08/2010 |
Last modified date:
| Published in: 2010
PetelenzKuehn_osmoadaptation_WT
ID: BIOMD0000000603
|
Submitter: Clemens Kühn |
Format: SBML |
Uploaded date: 19/04/2012 |
Last modified date:
| Published in: 2013
PetelenzKuehn_osmoadaptation_gpd1D
ID: BIOMD0000000610
|
Submitter: Clemens Kühn |
Format: SBML |
Uploaded date: 19/04/2012 |
Last modified date:
| Published in: 2013
Castillo2016 - Whole-genome metabolic model of L.bicolor using CoReCo
ID: MODEL1604280047
|
Submitter: Vijayalakshmi Chelliah |
Format: SBML |
Uploaded date: 28/04/2016 |
Last modified date:
| Published in: 2016
Zhu2015 - Combined gemcitabine and birinapant in pancreatic cancer cells - basic PD model
ID: BIOMD0000000668
|
Submitter: Vijayalakshmi Chelliah |
Format: SBML |
Uploaded date: 27/04/2016 |
Last modified date:
| Published in: 2015
Castillo2016 - Whole-genome metabolic model of B.dendrobatidis using CoReCo
ID: MODEL1604280048
|
Submitter: Vijayalakshmi Chelliah |
Format: SBML |
Uploaded date: 28/04/2016 |
Last modified date:
| Published in: 2016
Castillo2016 - Whole-genome metabolic model of T.harzianum using CoReCo
ID: MODEL1604280000
|
Submitter: Vijayalakshmi Chelliah |
Format: SBML |
Uploaded date: 28/04/2016 |
Last modified date:
| Published in: 2016
Castillo2016 - Whole-genome metabolic model of P.stipitis using CoReCo
ID: MODEL1604280049
|
Submitter: Vijayalakshmi Chelliah |
Format: SBML |
Uploaded date: 28/04/2016 |
Last modified date:
| Published in: 2016
Castillo2016 - Whole-genome metabolic model of P.chrysogenum using CoReCo
ID: MODEL1604280001
|
Submitter: Vijayalakshmi Chelliah |
Format: SBML |
Uploaded date: 28/04/2016 |
Last modified date:
| Published in: 2016
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