Model Search | BioModels

Filter your results

Curation status

Non-curated (23)
Manually curated (5)

Model format

SBML (26)
MATLAB (Octave) (1)
Other (1)

Modelling Approach

Ordinary differential equation model (5)

Model Flag

Non Kinetic (7)

Organisms

Homo sapiens (6)
Human immunodeficiency virus 1 (1)
Viruses (1)

GO

obsolete cell (2)
MAP kinase kinase activity (1)
MAP kinase kinase kinase activity (1)
MAPK cascade (1)
T cell activation (1)
activation of MAPK activity (1)
activation of MAPKK activity (1)
activation of MAPKKK activity (1)
biosynthetic process (1)
cell death (1)
cellular protein complex disassembly (1)
cyclin B1-CDK1 complex (1)
dephosphorylation (1)
epidermal growth factor receptor ligand maturation (1)
growth factor receptor binding (1)
inactivation of MAPK activity (1)
inactivation of MAPKK activity (1)
inactivation of MAPKKK activity (1)
metabolic process (1)
myeloid cell homeostasis (1)
phosphorylation (1)
positive regulation of immune response (1)
positive regulation of translation (1)
protein activation cascade (1)
protein binding (1)
protein catabolic process (1)
regulation of MAPK cascade (1)
regulation of canonical Wnt signaling pathway (1)
regulation of protein activation cascade (1)
regulation of protein kinase B signaling (1)
viral release from host cell (1)

UNIPROT

Adenomatous polyposis coli protein (2)
Segment polarity protein dishevelled homolog DVL-1 (1)
Axin-1 (1)
O70343 (1)
Epidermal growth factor receptor (1)
Complement C3 (1)
GTPase HRas (1)
Pro-epidermal growth factor (1)
RAF proto-oncogene serine/threonine-protein kinase (1)
Cyclin-dependent kinase 1 (1)
G2/mitotic-specific cyclin-B1 (1)
Serine/threonine-protein kinase B-raf (1)
Ras GTPase-activating protein 1 (1)
P23204 (1)
Mitogen-activated protein kinase 3 (1)
Mitogen-activated protein kinase 1 (1)
Phosphatidylethanolamine-binding protein 1 (1)
RAC-alpha serine/threonine-protein kinase (1)
Catenin beta-1 (1)
Glucokinase (1)
Rap1 GTPase-activating protein 1 (1)
Glycogen synthase kinase-3 beta (1)
Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN (1)
Ras-related protein R-Ras2 (1)
Ras-related protein Rap-1A (1)
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform (1)
Dual specificity mitogen-activated protein kinase kinase 1 (1)
Protein kinase C delta type (1)
Son of sevenless homolog 1 (1)
Rap guanine nucleotide exchange factor 1 (1)
Ribosomal protein S6 kinase alpha-1 (1)
Q96EB6 (1)
Lymphoid enhancer-binding factor 1 (1)

CHEBI

CHEBI:15377 (1)
hydron (1)
CHEBI:30616 (1)
CHEBI:4167 (1)
CHEBI:43474 (1)
CHEBI:456216 (1)
alpha-D-glucose 6-phosphate(2-) (1)

Sort by

100
75
50
20
10
Page size

Search terms:

Found: 28 models Download Select all |

Araujo2016 - Positive feedback in Cdk1 signalling keeps mitotic duration short and constant
ID: BIOMD0000000657 | Format: SBML | Submitter: Rahuman Sheriff | Uploaded date: 09/11/2018 | Last modified date: 21/12/2018

Thomson2009 – Unlimited multistability in multisite phosphorylation systems
ID: MODEL2002110001 | Format: SBML | Submitter: Rahuman Sheriff | Uploaded date: 12/02/2020 | Last modified date: 12/02/2020 | Published in: 2009

Renz2020 - GEM of Human alveolar macrophage with SARS-CoV-2
ID: MODEL2003020001 | Format: SBML | Submitter: Rahuman Sheriff | Uploaded date: 17/03/2020 | Last modified date: 17/03/2020 | Published in: 2020

Cardiomyocyte Telomere Damage by ROS without Cell Division
ID: MODEL1608250001 | Format: SBML | Submitter: Rahuman Sheriff | Uploaded date: 07/02/2019 | Last modified date: 14/02/2019 | Published in: 2019

WormJam-GEM
ID: MODEL1807230002 | Format: SBML | Submitter: Rahuman Sheriff | Uploaded date: 13/12/2018 | Last modified date: 06/12/2018 | Published in: 2018

ChowHall2008 Dynamics of Human Weight Change_ODE_1
ID: BIOMD0000000901 | Format: SBML | Submitter: Rahuman Sheriff | Uploaded date: 18/12/2019 | Last modified date: 18/12/2019 | Published in: 2008

McFarland2020 - Synthetase sequestration Model:a combined translation and tRNA charging cycle
ID: MODEL2001080005 | Format: Other | Submitter: Rahuman Sheriff | Uploaded date: 05/02/2020 | Last modified date: 05/02/2020 | Published in: 2020

Li2019 - Neurogranin stimulates Ca/calmodulin-dependent kinase II by inhibiting Calcineurin
ID: MODEL1903010001 | Format: SBML | Submitter: Rahuman Sheriff | Uploaded date: 18/12/2019 | Last modified date: 18/12/2019 | Published in: 2019

Moore2004 - Chronic Myeloid Leukemic cells and T-lymphocyte interaction
ID: BIOMD0000000662 | Format: SBML | Submitter: Rahuman Sheriff | Uploaded date: 30/05/2019 | Last modified date: 12/07/2019 | Published in: 2004

Keating2019 - Minimal model demonstrating SBML Level 3 packages.
ID: MODEL1904090001 | Format: SBML | Submitter: Rahuman Sheriff | Uploaded date: 17/12/2019 | Last modified date: 17/12/2019

Showing 1 to 10 of 28 models

First

1 2 3

Last

Shortcuts to browse models

Parameters Search

BioModels Parameters is a resource that facilitates easy search and retrieval of parameter values used in the SBML models stored in the BioModels repository.

Using GO Chart

This is a chart view of the models in this Database based on Gene Ontology.

Neurodegeneration models

Mechanistic models describing neurodegenerative disease processes

Path2Models

The approximately 140,000 models in the Path2Models project are now grouped taxonomically into 812 bundles, typically one per genus.

Patient-derived genome metabolic models

This section hosts models of metabolic pathways that are specific to individual patients