dePillis2013 - Mathematical modeling of regulatory T cell effects on renal cell carcinoma treatment

Model Identifier
BIOMD0000000908
Short description
Mathematical modeling of regulatory T cell effects on renal cell carcinoma treatment Lisette dePillis 1, , Trevor Caldwell 2, , Elizabeth Sarapata 2, and Heather Williams 2, 1. Department of Mathematics, Harvey Mudd College, Claremont, CA 91711 2. Harvey Mudd College, Claremont, CA 91711, United States, United States, United States Abstract We present a mathematical model to study the effects of the regulatory T cells (Treg) on Renal Cell Carcinoma (RCC) treatment with sunitinib. The drug sunitinib inhibits the natural self-regulation of the immune system, allowing the effector components of the immune system to function for longer periods of time. This mathematical model builds upon our non-linear ODE model by de Pillis et al. (2009) [13] to incorporate sunitinib treatment, regulatory T cell dynamics, and RCC-specific parameters. The model also elucidates the roles of certain RCC-specific parameters in determining key differences between in silico patients whose immune profiles allowed them to respond well to sunitinib treatment, and those whose profiles did not. Simulations from our model are able to produce results that reflect clinical outcomes to sunitinib treatment such as: (1) sunitinib treatments following standard protocols led to improved tumor control (over no treatment) in about 40% of patients; (2) sunitinib treatments at double the standard dose led to a greater response rate in about 15% the patient population; (3) simulations of patient response indicated improved responses to sunitinib treatment when the patient's immune strength scaling and the immune system strength coefficients parameters were low, allowing for a slightly stronger natural immune response. Keywords: Renal cell carcinoma, mathematical modeling., sunitinib, immune system, regulatory T cells.
Format
SBML
(L2V4)
Related Publication
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Mathematical modeling of regulatory T cell effects on renal cell carcinoma treatment
- Lisette de Pillis, Trevor Caldwell, Elizabeth Sarapata and Heather Williams
- DISCRETE AND CONTINUOUS DYNAMICAL SYSTEMS SERIES , 6/ 2013 , Volume 18 , Issue 4 , DOI: 10.3934/dcdsb.2013.18.915
- Department of Mathematics, Harvey Mudd College Claremont, CA 91711 USA Harvey Mudd College Claremont, CA 91711, USA
- Abstract. We present a mathematical model to study the effects of the regu-latory T cells (T reg ) on Renal Cell Carcinoma (RCC) treatment with sunitinib.The drug sunitinib inhibits the natural self-regulation of the immune system,allowing the effector components of the immune system to function for longerperiods of time. This mathematical model builds upon our non-linear ODEmodel by de Pillis et al. (2009) [13] to incorporate sunitinib treatment, regula-tory T cell dynamics, and RCC-specific parameters. The model also elucidatesthe roles of certain RCC-specific parameters in determining key differences be-tween in silico patients whose immune profiles allowed them to respond wellto sunitinib treatment, and those whose profiles did not.Simulations from our model are able to produce results that reflect clinicaloutcomes to sunitinib treatment such as: (1) sunitinib treatments followingstandard protocols led to improved tumor control (over no treatment) in about40% of patients; (2) sunitinib treatments at double the standard dose led to agreater response rate in about 15% the patient population; (3) simulations ofpatient response indicated improved responses to sunitinib treatment when thepatient’s immune strength scaling and the immune system strength coefficientsparameters were low, allowing for a slightly stronger natural immune response
Contributors
Submitter of the first revision: Mohammad Umer Sharif Shohan
Submitter of this revision: Mohammad Umer Sharif Shohan
Modellers: Mohammad Umer Sharif Shohan
Submitter of this revision: Mohammad Umer Sharif Shohan
Modellers: Mohammad Umer Sharif Shohan
Metadata information
Curation status
Curated
Tags
Connected external resources
Name | Description | Size | Actions |
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Model files |
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dePillis2013.xml | SBML L2V4 dePillis2013 - Mathematical modeling of regulatory T cell effects on renal cell carcinoma treatment | 73.52 KB | Preview | Download |
Additional files |
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dePillis2013.cps | COPASI version 4.24 (Build 197) dePillis2013 - Mathematical modeling of regulatory T cell effects on renal cell carcinoma treatment | 124.08 KB | Preview | Download |
dePillis2013.sedml | SEDML L1V2 dePillis2013 - Mathematical modeling of regulatory T cell effects on renal cell carcinoma treatment | 5.08 KB | Preview | Download |
- Model originally submitted by : Mohammad Umer Sharif Shohan
- Submitted: Jan 6, 2020 2:30:23 PM
- Last Modified: Jan 6, 2020 2:30:23 PM
Revisions
Legends
: Variable used inside SBML models
: Variable used inside SBML models
Species
Species | Initial Concentration/Amount |
---|---|
N natural killer cell |
2.5E8 mmol |
S C71622 |
0.0 mmol |
R CD4+ CD25+ Regulatory T Cells |
3.52E8 mmol |
C Neoplastic Cell |
2.14E9 mmol |
I Interleukin-2 |
1173.0 mmol |
T Neoplastic Cell |
4.662E9 mmol |
L C12543 |
526800.0 mmol |
Reactions
Reactions | Rate | Parameters |
---|---|---|
N => ; T | compartment*p*N*T | p = 6.682E-14 |
=> S | compartment*vs | vs = 0.0 |
=> R; C, I | compartment*(u*(w_u*C-R)+p_R*R*I/(g_R+I)) | g_R = 11.027; w_u = 0.0122; p_R = 0.03598; u = 0.03851 |
=> C | compartment*beta*(alpha_beta-C) | alpha_beta = 2.14E9; beta = 0.0063 |
I => | compartment*mu_I*I | mu_I = 11.7427 |
=> T | compartment*a*T*(1-b*T) | a = 0.2065; b = 2.145E-10 |
=> I; C, L | compartment*(phi*C+w*L*I/(zeta+I)) | zeta = 2503.6; phi = 3.594E-7; w = 0.05314 |
=> N; C, I | compartment*(f*(e_f*C-N)+p_N*N*I/(g_N+I)) | p_N = 0.0668; f = 0.0125; g_N = 250360.0; e_f = 0.1168 |
T => ; R, N | compartment*(c*exp((-delta_T)*R)*N*T+D*T) | delta_T = 1.59E-9; c = 8.68E-10; D = 9.47552761007735E-6 |
=> L; N, C, T, I | compartment*((r_1*N+r_2*C)*T+p_I*L*I/(g_I+I)+j*T/(k+T)*L) | j = 0.1245; r_2 = 1.0E-15; g_I = 2503.6; r_1 = 6.682E-12; p_I = 1.111; k = 2.019E7 |
Curator's comment:
(added: 06 Jan 2020, 14:30:16, updated: 06 Jan 2020, 14:30:16)
(added: 06 Jan 2020, 14:30:16, updated: 06 Jan 2020, 14:30:16)
The model has been encoded in COPASI 4.24 (Build 197) and the Figure 2b of the publication has been reproduced using COPASI