Hoffman2018- ADCC against cancer

  public model
Model Identifier
BIOMD0000000802
Short description
The paper describes a model of ADCC. Created by COPASI 4.26 (Build 213) This model is described in the article: A mathematical model of antibody-dependent cellular cytotoxicity (ADCC) F. Hoffman, D. Gavaghan, J. Osborne, I.P. Barrett, T. You, H. Ghadially, R. Sainson, R.W. Wilkinson, H.M. Byrne Journal of Theoretical Biology 436 (2018) 39–50 Abstract: Immunotherapies exploit the immune system to target and kill cancer cells, while sparing healthy tis- sue. Antibody therapies, an important class of immunotherapies, involve the binding to specific antigens on the surface of the tumour cells of antibodies that activate natural killer (NK) cells to kill the tu- mour cells. Preclinical assessment of molecules that may cause antibody-dependent cellular cytotoxicity (ADCC) involves co-culturing cancer cells, NK cells and antibody in vitro for several hours and measuring subsequent levels of tumour cell lysis. Here we develop a mathematical model of such an in vitro ADCC assay, formulated as a system of time-dependent ordinary differential equations and in which NK cells kill cancer cells at a rate which depends on the amount of antibody bound to each cancer cell. Numerical simulations generated using experimentally-based parameter estimates reveal that the system evolves on two timescales: a fast timescale on which antibodies bind to receptors on the surface of the tumour cells, and NK cells form complexes with the cancer cells, and a longer time-scale on which the NK cells kill the cancer cells. We construct approximate model solutions on each timescale, and show that they are in good agreement with numerical simulations of the full system. Our results show how the processes involved in ADCC change as the initial concentration of antibody and NK-cancer cell ratio are varied. We use these results to explain what information about the tumour cell kill rate can be extracted from the cytotoxicity assays. To cite BioModels Database, please use: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models . To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.
Format
SBML (L3V1)
Related Publication
  • A mathematical model of antibody-dependent cellular cytotoxicity (ADCC).
  • Hoffman F, Gavaghan D, Osborne J, Barrett IP, You T, Ghadially H, Sainson R, Wilkinson RW, Byrne HM
  • Journal of theoretical biology , 1/ 2018 , Volume 436 , pages: 39-50 , PubMed ID: 28970093
  • Department of Computer Science, University of Oxford, Oxford, UK.
  • Immunotherapies exploit the immune system to target and kill cancer cells, while sparing healthy tissue. Antibody therapies, an important class of immunotherapies, involve the binding to specific antigens on the surface of the tumour cells of antibodies that activate natural killer (NK) cells to kill the tumour cells. Preclinical assessment of molecules that may cause antibody-dependent cellular cytotoxicity (ADCC) involves co-culturing cancer cells, NK cells and antibody in vitro for several hours and measuring subsequent levels of tumour cell lysis. Here we develop a mathematical model of such an in vitro ADCC assay, formulated as a system of time-dependent ordinary differential equations and in which NK cells kill cancer cells at a rate which depends on the amount of antibody bound to each cancer cell. Numerical simulations generated using experimentally-based parameter estimates reveal that the system evolves on two timescales: a fast timescale on which antibodies bind to receptors on the surface of the tumour cells, and NK cells form complexes with the cancer cells, and a longer time-scale on which the NK cells kill the cancer cells. We construct approximate model solutions on each timescale, and show that they are in good agreement with numerical simulations of the full system. Our results show how the processes involved in ADCC change as the initial concentration of antibody and NK-cancer cell ratio are varied. We use these results to explain what information about the tumour cell kill rate can be extracted from the cytotoxicity assays.
Contributors
Submitter of the first revision: Jinghao Men
Submitter of this revision: Jinghao Men
Modellers: Jinghao Men

Metadata information

is (2 statements)
BioModels Database BIOMD0000000802
BioModels Database MODEL1908200002

isDescribedBy (1 statement)
PubMed 28970093

hasTaxon (1 statement)
Taxonomy Homo sapiens

hasProperty (2 statements)

Curation status
Curated



Connected external resources

SBGN view in Newt Editor

Name Description Size Actions

Model files

Hoffman2017.xml SBML L3V1 representation of ADCC model 54.02 KB Preview | Download

Additional files

Hoffman2017.cps CPS file of the model in COPASI 71.00 KB Preview | Download
Hoffman2017.sedml Auto-generated SEDML file 2.60 KB Preview | Download

  • Model originally submitted by : Jinghao Men
  • Submitted: Aug 20, 2019 4:26:43 PM
  • Last Modified: Aug 20, 2019 4:26:43 PM
Revisions
  • Version: 3 public model Download this version
    • Submitted on: Aug 20, 2019 4:26:43 PM
    • Submitted by: Jinghao Men
    • With comment: Automatically added model identifier BIOMD0000000802
Legends
: Variable used inside SBML models


Species
Species Initial Concentration/Amount
A

Antibody
1.0 mmol
S

malignant cell
1.0 mmol
R

Complex
0.0 mmol
C

Complex
0.0 mmol
Reactions
Reactions Rate Parameters
=> A; R, S tme*a2*y*R*S y = 1.0 1; a2 = 1.44 1
S => ; C tme*f*C f = 0.0 1
R => tme*a2*R a2 = 1.44 1
C => tme*v2*C v2 = 14.4 1
A => ; R, S tme*a1*(1-R)*A*S a1 = 0.001 1
=> R; A tme*a1/y*(1-R)*A y = 1.0 1; a1 = 0.001 1
=> C; S tme*v1*(u-C)*(S-C) v1 = 120.0 1; u = 20.0 1
Curator's comment:
(added: 20 Aug 2019, 16:26:37, updated: 20 Aug 2019, 16:26:37)
Publication figure 4 reproduced as per literature. Figure data is generated using COPASI 4.26 (build 213).