Jenner2018 - treatment of oncolytic virus

Model Identifier
BIOMD0000000789
Short description
The paper describes a model of oncolytic virotherapy.
Created by COPASI 4.26 (Build 213)
This model is described in the article:
Mathematical Modelling of the Interaction Between Cancer Cells and an Oncolytic Virus: Insights into the Effects of Treatment Protocols
Adrianne L. Jenner, Chae-Ok Yun, Peter S. Kim, Adelle C. F. Coster
Bull Math Biol (2018) 80:1615–1629
Abstract:
Oncolyticvirotherapyisanexperimentalcancertreatmentthatusesgenet- ically engineered viruses to target and kill cancer cells. One major limitation of this treatment is that virus particles are rapidly cleared by the immune system, preventing them from arriving at the tumour site. To improve virus survival and infectivity Kim et al. (Biomaterials 32(9):2314–2326, 2011) modified virus particles with the polymer polyethylene glycol (PEG) and the monoclonal antibody herceptin. Whilst PEG mod- ification appeared to improve plasma retention and initial infectivity, it also increased the virus particle arrival time. We derive a mathematical model that describes the inter- action between tumour cells and an oncolytic virus. We tune our model to represent the experimental data by Kim et al. (2011) and obtain optimised parameters. Our model provides a platform from which predictions may be made about the response of cancer growth to other treatment protocols beyond those in the experiments. Through model simulations, we find that the treatment protocol affects the outcome dramatically. We quantify the effects of dosage strategy as a function of tumour cell replication and tumour carrying capacity on the outcome of oncolytic virotherapy as a treatment. The relative significance of the modification of the virus and the crucial role it plays in optimising treatment efficacy are explored.
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Format
SBML
(L3V1)
Related Publication
-
Mathematical Modelling of the Interaction Between Cancer Cells and an Oncolytic Virus: Insights into the Effects of Treatment Protocols.
- Jenner AL, Yun CO, Kim PS, Coster ACF
- Bulletin of mathematical biology , 6/ 2018 , Volume 80 , Issue 6 , pages: 1615-1629 , PubMed ID: 29644518
- School of Mathematics and Statistics, The University of Sydney, Sydney, NSW, 2006, Australia.
- Oncolytic virotherapy is an experimental cancer treatment that uses genetically engineered viruses to target and kill cancer cells. One major limitation of this treatment is that virus particles are rapidly cleared by the immune system, preventing them from arriving at the tumour site. To improve virus survival and infectivity Kim et al. (Biomaterials 32(9):2314-2326, 2011) modified virus particles with the polymer polyethylene glycol (PEG) and the monoclonal antibody herceptin. Whilst PEG modification appeared to improve plasma retention and initial infectivity, it also increased the virus particle arrival time. We derive a mathematical model that describes the interaction between tumour cells and an oncolytic virus. We tune our model to represent the experimental data by Kim et al. (2011) and obtain optimised parameters. Our model provides a platform from which predictions may be made about the response of cancer growth to other treatment protocols beyond those in the experiments. Through model simulations, we find that the treatment protocol affects the outcome dramatically. We quantify the effects of dosage strategy as a function of tumour cell replication and tumour carrying capacity on the outcome of oncolytic virotherapy as a treatment. The relative significance of the modification of the virus and the crucial role it plays in optimising treatment efficacy are explored.
Contributors
Submitter of the first revision: Jinghao Men
Submitter of this revision: Krishna Kumar Tiwari
Modellers: Krishna Kumar Tiwari, Jinghao Men
Submitter of this revision: Krishna Kumar Tiwari
Modellers: Krishna Kumar Tiwari, Jinghao Men
Metadata information
isDescribedBy (1 statement)
hasTaxon (1 statement)
hasProperty (2 statements)
hasTaxon (1 statement)
hasProperty (2 statements)
Curation status
Non-curated
Modelling approach(es)
Tags
Connected external resources
Name | Description | Size | Actions |
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Model files |
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Jenner2018.xml | SBML L3V1 representation of virotherapy model | 45.36 KB | Preview | Download |
Additional files |
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Jenner2018.cps | CPS file of the model in COPASI | 61.37 KB | Preview | Download |
Jenner2018.sedml | Auto-generated SEDML file | 1.64 KB | Preview | Download |
- Model originally submitted by : Jinghao Men
- Submitted: Aug 12, 2019 11:11:43 AM
- Last Modified: Mar 12, 2021 8:58:04 AM
Revisions
-
Version: 4
- Submitted on: Mar 12, 2021 8:58:04 AM
- Submitted by: Krishna Kumar Tiwari
- With comment: Updating model events to resolve L3V1 validation error.
-
Version: 3
- Submitted on: Aug 12, 2019 11:11:43 AM
- Submitted by: Jinghao Men
- With comment: Automatically added model identifier BIOMD0000000789
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revisions as only public revisions are displayed here. Any private revisions
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Legends
: Variable used inside SBML models
: Variable used inside SBML models
Species
Species | Initial Concentration/Amount |
---|---|
V Oncolytic Virus |
0.0 mmol |
S neoplastic cell |
2.51E8 mmol |
T neoplastic cell |
2.51E8 mmol |
I neoplastic cell |
0.0 mmol |
Reactions
Reactions | Rate | Parameters |
---|---|---|
V => | tme*dv*V | dv = 0.0 1/d |
S => I; V, T | tme*b*S*V/T | b = 0.0 1/d |
T = I+S | [] | [] |
=> S | tme*r*S*ln(L/S) | r = 0.037 1/d; L = 3.49E9 1 |
I => | tme*di*I | di = 0.0 1/d |
=> V; I | tme*a*di*I | a = 0.0 1; di = 0.0 1/d |
Curator's comment:
(added: 12 Aug 2019, 11:11:36, updated: 12 Aug 2019, 11:11:36)
(added: 12 Aug 2019, 11:11:36, updated: 12 Aug 2019, 11:11:36)
Publication figure 3a reproduced as per literature. Figure data is generated using COPASI 4.26 (build 213).