Iarosz2015 - brain tumor

  public model
Model Identifier
BIOMD0000000775
Short description
The paper describes a model of brain tumor. Created by COPASI 4.25 (Build 207) This model is described in the article: Mathematical model of brain tumour with glia-neuron interactions and chemotherapy treatment Kelly C. Iarosz, Fernando S. Borges, Antonio M. Batista, Murilo S. Baptista, Regiane A. N. Siqueira, Ricardo L. Viana, Sergio R. Lopes Abstract: In recent years, it became clear that a better understanding of the interactions among the main elements involved in the cancer network is necessary for the treatment of cancer and the suppression of cancer growth. In this work we propose a system of coupled differential equations that model brain tumour under treatment by chemotherapy, which considers interactions among the glial cells, the glioma, the neurons, and the chemotherapeutic agents. We study the conditions for the glioma growth to be eliminated, and identify values of the parameters for which the inhibition of the glioma growth is obtained with a minimal loss of healthy cells. To cite BioModels Database, please use: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models . To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.
Format
SBML (L3V1)
Related Publication
  • Mathematical model of brain tumour with glia-neuron interactions and chemotherapy treatment.
  • Iarosz KC, Borges FS, Batista AM, Baptista MS, Siqueira RA, Viana RL, Lopes SR
  • Journal of theoretical biology , 3/ 2015 , Volume 368 , pages: 113-121 , PubMed ID: 25596516
  • Institute for Complex Systems and Mathematical Biology, University of Aberdeen, AB24 3UE Aberdeen, UK. Electronic address: kiarosz@gmail.com.
  • In recent years, it became clear that a better understanding of the interactions among the main elements involved in the cancer network is necessary for the treatment of cancer and the suppression of cancer growth. In this work we propose a system of coupled differential equations that model brain tumour under treatment by chemotherapy, which considers interactions among the glial cells, the glioma, the neurons, and the chemotherapeutic agents. We study the conditions for the glioma growth to be eliminated, and identify values of the parameters for which the inhibition of the glioma growth is obtained with a minimal loss of healthy cells.
Contributors
Submitter of the first revision: Jinghao Men
Submitter of this revision: Jinghao Men
Modellers: Jinghao Men

Metadata information

is (2 statements)
BioModels Database BIOMD0000000775
BioModels Database MODEL1908020001

isDescribedBy (1 statement)
PubMed 25596516

hasTaxon (1 statement)
Taxonomy Homo sapiens

hasProperty (4 statements)
Mathematical Modelling Ontology Ordinary differential equation model
Gene Ontology immune response to tumor cell
Experimental Factor Ontology brain neoplasm
NCIt Chemotherapy


Curation status
Curated


Tags

Connected external resources

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Name Description Size Actions

Model files

Iarosz2015.xml SBML L3V1 representation of brain cancer model 66.52 KB Preview | Download

Additional files

Iarosz2015.cps CPS file of the model in COPASI 78.97 KB Preview | Download
Iarosz2015.sedml Auto-generated SEDML file 3.37 KB Preview | Download

  • Model originally submitted by : Jinghao Men
  • Submitted: Aug 2, 2019 12:17:19 PM
  • Last Modified: Aug 2, 2019 12:17:19 PM
Revisions
  • Version: 3 public model Download this version
    • Submitted on: Aug 2, 2019 12:17:19 PM
    • Submitted by: Jinghao Men
    • With comment: Automatically added model identifier BIOMD0000000775
Legends
: Variable used inside SBML models


Species
Species Initial Concentration/Amount
N

neuron
0.99 mmol
G

glial cell
0.99 mmol
C

glioma cell
0.01 mmol
Q

Chemotherapy
0.0 mmol
Reactions
Reactions Rate Parameters
N => ; Q tme*p3*N*Q/(a3+N) p3 = 4.7E-8 1/d; a3 = 1.0 1
=> N; G tme*a*gg*H*N a = 2.0 1; gg = -1.1088E-4 1/d; H = 1.0 1
G => ; Q tme*p1*G*Q/(a1+G) a1 = 1.0 1; p1 = 4.7E-8 1/d
C => ; Q tme*p2*C*Q/(a2+C) p2 = 4.7E-5 1/d; a2 = 1.0 1
=> C tme*o2*C*(1-C) o2 = 0.012 1/d
=> G tme*o1*G*(1-G) o1 = 0.0068 1/d
C => ; G tme*b2*C*G b2 = 0.0018 1/d
=> Q tme*fi fi = 100.0 1/d
G => ; C tme*b1*G*C b1 = 0.018 1/d
Q => tme*zeta*Q zeta = 0.2 1/d
Curator's comment:
(added: 02 Aug 2019, 12:17:06, updated: 02 Aug 2019, 12:17:06)
Publication figure 2 and 3 reproduced as per literature. Figure data is generated using COPASI 4.25 (build 197).