Macnamara2015/2 - virotherapy virus-free submodel

  public model
Model Identifier
BIOMD0000000767
Short description
The paper describes a submodel of oncolytic virotherapy. Created by COPASI 4.25 (Build 207) This model is described in the article: Memory versus effector immune responses in oncolytic virotherapies Cicely Macnamara, Raluca Eftimie Abstract: The main priority when designing cancer immuno-therapies has been to seek viable biological mechanisms that lead to permanent cancer eradica- tion or cancer control. Understanding the delicate balance between the role of effector and memory cells on eliminating cancer cells remains an elusive problem in immunology. Here we make an initial investigation into this problem with the help of a mathematical model for oncolytic virotherapy; although the model can in fact be made general enough to be applied also to other immunological problems. Our results show that long-term cancer con- trol is associated with a large number of persistent effector cells (irrespective of the initial peak in effector cell numbers). However, this large number of persistent effector cells is sustained by a relatively large number of memory cells. Moreover, we show that cancer control from a dormant state cannot be predicted by the size of the memory population. To cite BioModels Database, please use: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models . To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.
Format
SBML (L3V1)
Related Publication
  • Memory versus effector immune responses in oncolytic virotherapies.
  • Macnamara C, Eftimie R
  • Journal of theoretical biology , 7/ 2015 , Volume 377 , pages: 1-9 , PubMed ID: 25882747
  • Division of Mathematics, University of Dundee, Dundee DD1 4HN, United Kingdom. Electronic address: c.k.macnamara@dundee.ac.uk.
  • The main priority when designing cancer immuno-therapies has been to seek viable biological mechanisms that lead to permanent cancer eradication or cancer control. Understanding the delicate balance between the role of effector and memory cells on eliminating cancer cells remains an elusive problem in immunology. Here we make an initial investigation into this problem with the help of a mathematical model for oncolytic virotherapy; although the model can in fact be made general enough to be applied also to other immunological problems. According to this model, we find that long-term cancer control is associated with a large number of persistent effector cells (irrespective of the initial peak in effector cell numbers). However, this large number of persistent effector cells is sustained by a relatively large number of memory cells. Moreover, the results of the mathematical model suggest that cancer control from a dormant state cannot be predicted by the size of the memory population.
Contributors
Submitter of the first revision: Jinghao Men
Submitter of this revision: Jinghao Men
Modellers: Jinghao Men

Metadata information

is (2 statements)
BioModels Database MODEL1907290003
BioModels Database BIOMD0000000767

isDescribedBy (3 statements)
PubMed 25882747
BioModels Database MODEL1907290002
BioModels Database BIOMD0000000766

hasTaxon (1 statement)
Taxonomy Homo sapiens

hasProperty (2 statements)
Mathematical Modelling Ontology Ordinary differential equation model
NCIt Oncolytic Virus Therapy

isDerivedFrom (5 statements)
Mathematical Modelling Ontology Ordinary differential equation model
BioModels Database BIOMD0000000766
NCIt Oncolytic Virus Therapy
Taxonomy Homo sapiens
BioModels Database MODEL1907290002


Curation status
Curated



Connected external resources

SBGN view in Newt Editor

Name Description Size Actions

Model files

Macnamara2015:2.xml SBML L3V1 representation of virotherapy virus-free model 42.84 KB Preview | Download

Additional files

Macnamara2015:2.cps CPS file of the model in COPASI 58.08 KB Preview | Download
Macnamara2015:2.sedml Auto-generated SEDML file 2.12 KB Preview | Download

  • Model originally submitted by : Jinghao Men
  • Submitted: Jul 29, 2019 2:40:36 PM
  • Last Modified: Jul 29, 2019 2:40:36 PM
Revisions
  • Version: 3 public model Download this version
    • Submitted on: Jul 29, 2019 2:40:36 PM
    • Submitted by: Jinghao Men
    • With comment: Automatically added model identifier BIOMD0000000767
Legends
: Variable used inside SBML models


Species
Species Initial Concentration/Amount
U

malignant cell
1000000.0 mmol
E

Effector Immune Cell
0.0 mmol
Reactions
Reactions Rate Parameters
U => ; E tme*du*U*E/(he+E) he = 1000.0 1; du = 2.0 1/d
=> E; M, U tme*pe*M*U/(U+hv) hv = 10000.0 1; pe = 0.4 1/d
E => tme*de*E de = 0.1 1/d
=> U tme*r*U*(1-U/K) r = 0.927 1/d; K = 1.8182E8 1
E => ; U tme*dt*U*E dt = 5.0E-9 1/d
Curator's comment:
(added: 29 Jul 2019, 14:40:15, updated: 29 Jul 2019, 14:40:15)
Publication figure 5(m=1) reproduced as per literature. Other curves are reproduced by changing values of m. Figure data is generated using COPASI 4.25 (build 197).