Eftimie2018 - Cancer and Immune biomarkers

  public model
Model Identifier
BIOMD0000000741
Short description
The paper describes a model on the detection of cancer based on cancer and immune biomarkers. 
Created by COPASI 4.25 (Build 207) 

This model is described in the article: 
Improving cancer detection through combinations of cancer and immune biomarkers: a modelling approach 
Raluca Eftimie and and Esraa Hassanein 
J Transl Med (2018) 16:73 

Abstract: 
Background: Early cancer diagnosis is one of the most important challenges of cancer research, since in many can- cers it can lead to cure for patients with early stage diseases. For epithelial ovarian cancer (which is the leading cause of death among gynaecologic malignancies) the classical detection approach is based on measurements of CA-125 biomarker. However, the poor sensitivity and specificity of this biomarker impacts the detection of early-stage cancers. 
Methods: Here we use a computational approach to investigate the effect of combining multiple biomarkers for ovarian cancer (e.g., CA-125 and IL-7), to improve early cancer detection. 
Results: We show that this combined biomarkers approach could lead indeed to earlier cancer detection. However, the immune response (which influences the level of secreted IL-7 biomarker) plays an important role in improving and/or delaying cancer detection. Moreover, the detection level of IL-7 immune biomarker could be in a range that would not allow to distinguish between a healthy state and a cancerous state. In this case, the construction of solu- tion diagrams in the space generated by the IL-7 and CA-125 biomarkers could allow us predict the long-term evolu- tion of cancer biomarkers, thus allowing us to make predictions on cancer detection times. 
Conclusions: Combining cancer and immune biomarkers could improve cancer detection times, and any predic- tions that could be made (at least through the use of CA-125/IL-7 biomarkers) are patient specific. 
Keywords: Ovarian cancer, Mathematical model, CA-125 biomarker, IL-7 biomarker, Cancer detection times 

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Format
SBML (L3V1)
Related Publication
  • Improving cancer detection through combinations of cancer and immune biomarkers: a modelling approach
  • Raluca Eftimie, Esraa Hassanein
  • Journal of Translational Medicine , 3/ 2018 , Issue 16:73 , DOI: 10.1186/s12967-018-1432-8
  • Correspondence: Raluca Eftimie E-mail address: r.a.eftimie@dundee.ac.uk Division of Mathematics, University of Dundee, Dundee DD1 4HN, UK
  • Background: Early cancer diagnosis is one of the most important challenges of cancer research, since in many can- cers it can lead to cure for patients with early stage diseases. For epithelial ovarian cancer (which is the leading cause of death among gynaecologic malignancies) the classical detection approach is based on measurements of CA-125 biomarker. However, the poor sensitivity and specificity of this biomarker impacts the detection of early-stage cancers. Methods: Here we use a computational approach to investigate the effect of combining multiple biomarkers for ovarian cancer (e.g., CA-125 and IL-7), to improve early cancer detection. Results: We show that this combined biomarkers approach could lead indeed to earlier cancer detection. However, the immune response (which influences the level of secreted IL-7 biomarker) plays an important role in improving and/or delaying cancer detection. Moreover, the detection level of IL-7 immune biomarker could be in a range that would not allow to distinguish between a healthy state and a cancerous state. In this case, the construction of solu- tion diagrams in the space generated by the IL-7 and CA-125 biomarkers could allow us predict the long-term evolu- tion of cancer biomarkers, thus allowing us to make predictions on cancer detection times. Conclusions: Combining cancer and immune biomarkers could improve cancer detection times, and any predic- tions that could be made (at least through the use of CA-125/IL-7 biomarkers) are patient specific. Keywords: Ovarian cancer, Mathematical model, CA-125 biomarker, IL-7 biomarker, Cancer detection times
Contributors
Submitter of the first revision: Jinghao Men
Submitter of this revision: Jinghao Men
Modellers: Jinghao Men

Metadata information

is (2 statements)
BioModels Database MODEL1907050002
BioModels Database BIOMD0000000741

isDescribedBy (1 statement)
PubMed 29554938

hasTaxon (1 statement)
Taxonomy Homo sapiens

isVersionOf (1 statement)
occursIn (1 statement)
Brenda Tissue Ontology ovary

hasProperty (2 statements)
Experimental Factor Ontology ovarian carcinoma
Mathematical Modelling Ontology Ordinary differential equation model


Curation status
Curated



Connected external resources

SBGN view in Newt Editor

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Model files

Eftimie2018.xml SBML L2V4 representation of cancer-immune biomarkers model 78.88 KB Preview | Download

Additional files

Eftimie2018.cps CPS file of the model in COPASI 85.32 KB Preview | Download
Eftimie2018.sedml auto-generated SEDML file 1.01 KB Preview | Download
Fig3a''.png PNG file of the model simulation Fig3a'' 15.12 KB Preview | Download

  • Model originally submitted by : Jinghao Men
  • Submitted: Jul 9, 2019 3:07:02 PM
  • Last Modified: Jul 9, 2019 3:07:02 PM
Revisions
  • Version: 7 public model Download this version
    • Submitted on: Jul 9, 2019 3:07:02 PM
    • Submitted by: Jinghao Men
    • With comment: Automatically added model identifier BIOMD0000000741
Legends
: Variable used inside SBML models


Species
Species Initial Concentration/Amount
BT

Mucin-16 ; Biomarker
0.0 mmol
NI

lymphocyte ; Lymphocyte
0.0 mmol
NT

malignant cell ; Malignant Cell
1.0 mmol
BI

Interleukin-7 ; Biomarker
0.0 mmol
Reactions
Reactions Rate Parameters
=> BT; NT compartment*ft*rt*NT ft = 0.1 1; rt = 4.5E-5 1/ks
=> NI; NT compartment*ai*NT*(1-NI/M) M = 1.0E9 1; ai = 2.0794 1/ks
=> BT compartment*fhtrhtnh fhtrhtnh = 4560.0 1/ks
BT => compartment*ket*BT ket = 0.11 1/ks
=> NT compartment*kgr*NT kgr = 0.00578 1/ks
=> BI compartment*fhirhinh fhirhinh = 19548.0 1/ks
BI => compartment*kei*BI kei = 2.14 1/ks
=> BI; NI compartment*firi*NI firi = 1.0925E-6 1/ks
NI => compartment*di*NI di = 0.4 1/ks
NT => ; NI compartment*dt*NT*NI/(hi+NI) hi = 1000.0 1; dt = 1.0E-6 1/ks
Curator's comment:
(added: 09 Jul 2019, 10:03:37, updated: 09 Jul 2019, 10:03:37)
Publication figure 3a'' reproduced as per literature. Other figures can also be reproduced with same set of parameter. Figure data is generated using COPASI 4.25 (build 197).