Phillips2007_AscendingArousalSystem_SleepWakeDynamics

This a model from the article:
A quantitative model of sleep-wake dynamics based on the physiology of the
brainstem ascending arousal system.
Phillips AJ, Robinson PA. J Biol Rhythms
2007 Apr;22(2):167-79 17440218
,
Abstract:
A quantitative, physiology-based model of the ascending arousal system is
developed, using continuum neuronal population modeling, which involves
averaging properties such as firing rates across neurons in each population. The
model includes the ventrolateral preoptic area (VLPO), where circadian and
homeostatic drives enter the system, the monoaminergic and cholinergic nuclei of
the ascending arousal system, and their interconnections. The human sleep-wake
cycle is governed by the activities of these nuclei, which modulate the
behavioral state of the brain via diffuse neuromodulatory projections. The model
parameters are not free since they correspond to physiological observables.
Approximate parameter bounds are obtained by requiring consistency with
physiological and behavioral measures, and the model replicates the human
sleep-wake cycle, with physiologically reasonable voltages and firing rates.
Mutual inhibition between the wake-promoting monoaminergic group and
sleep-promoting VLPO causes ;;flip-flop'' behavior, with most time spent in 2
stable steady states corresponding to wake and sleep, with transitions between
them on a timescale of a few minutes. The model predicts hysteresis in the
sleep-wake cycle, with a region of bistability of the wake and sleep states.
Reducing the monoaminergic-VLPO mutual inhibition results in a smaller
hysteresis loop. This makes the model more prone to wake-sleep transitions in
both directions and makes the states less distinguishable, as in narcolepsy. The
model behavior is robust across the constrained parameter ranges, but with
sufficient flexibility to describe a wide range of observed phenomena.
This model was taken from the CellML repository
and automatically converted to SBML.
The original model was:
Phillips AJ, Robinson PA. (2007) - version=1.0
The original CellML model was created by:
Catherine Lloyd
c.lloyd@auckland.ac.nz
The University of Auckland
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A quantitative model of sleep-wake dynamics based on the physiology of the brainstem ascending arousal system.
- Phillips AJ, Robinson PA
- Journal of biological rhythms , 4/ 2007 , Volume 22 , pages: 167-179 , PubMed ID: 17440218
- School of Physics, University of Sydney, New South Wales 2006, Australia. ajp@physics.usyd.edu.au
- A quantitative, physiology-based model of the ascending arousal system is developed, using continuum neuronal population modeling, which involves averaging properties such as firing rates across neurons in each population. The model includes the ventrolateral preoptic area (VLPO), where circadian and homeostatic drives enter the system, the monoaminergic and cholinergic nuclei of the ascending arousal system, and their interconnections. The human sleep-wake cycle is governed by the activities of these nuclei, which modulate the behavioral state of the brain via diffuse neuromodulatory projections. The model parameters are not free since they correspond to physiological observables. Approximate parameter bounds are obtained by requiring consistency with physiological and behavioral measures, and the model replicates the human sleep-wake cycle, with physiologically reasonable voltages and firing rates. Mutual inhibition between the wake-promoting monoaminergic group and sleep-promoting VLPO causes ;;flip-flop'' behavior, with most time spent in 2 stable steady states corresponding to wake and sleep, with transitions between them on a timescale of a few minutes. The model predicts hysteresis in the sleep-wake cycle, with a region of bistability of the wake and sleep states. Reducing the monoaminergic-VLPO mutual inhibition results in a smaller hysteresis loop. This makes the model more prone to wake-sleep transitions in both directions and makes the states less distinguishable, as in narcolepsy. The model behavior is robust across the constrained parameter ranges, but with sufficient flexibility to describe a wide range of observed phenomena.
Submitter of this revision: Ahmad Zyoud
Modellers: Camille Laibe, Ahmad Zyoud
Metadata information
BioModels Database BIOMD0000000917
BioModels Database MODEL1006230025
isDescribedBy (1 statement)
hasTaxon (1 statement)
isVersionOf (1 statement)
occursIn (1 statement)
hasProperty (2 statements)
Connected external resources
Name | Description | Size | Actions |
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Model files |
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Phillips2007_Curated.xml | SBML L2V4 representation of Phillips2007_AscendingArousalSystem_SleepWakeDynamics_Curated | 50.04 KB | Preview | Download |
Additional files |
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MODEL1006230025-biopax2.owl | Auto-generated BioPAX (Level 2) | 1.07 KB | Preview | Download |
MODEL1006230025-biopax3.owl | Auto-generated BioPAX (Level 3) | 2.04 KB | Preview | Download |
MODEL1006230025.m | Auto-generated Octave file | 3.69 KB | Preview | Download |
MODEL1006230025.pdf | Auto-generated PDF file | 144.39 KB | Preview | Download |
MODEL1006230025.png | Auto-generated Reaction graph (PNG) | 0.00 Bytes | Preview | Download |
MODEL1006230025.sci | Auto-generated Scilab file | 215.00 Bytes | Preview | Download |
MODEL1006230025.svg | Auto-generated Reaction graph (SVG) | 851.00 Bytes | Preview | Download |
MODEL1006230025.vcml | Auto-generated VCML file | 900.00 Bytes | Preview | Download |
MODEL1006230025.xpp | Auto-generated XPP file | 2.63 KB | Preview | Download |
MODEL1006230025_urn.xml | Auto-generated SBML file with URNs | 16.75 KB | Preview | Download |
Phillips2007.cps | COPASI version 4.27 (Build 217) Phillips2007_AscendingArousalSystem_SleepWakeDynamics_Curated | 81.55 KB | Preview | Download |
Phillips2007.sedml | sed-ml L1V2 Phillips2007_AscendingArousalSystem_SleepWakeDynamics_Curated | 6.74 KB | Preview | Download |
Phillips2007_Orignal.xml | SBML L2V4 Phillips2007_AscendingArousalSystem_SleepWakeDynamics_Original File | 15.64 KB | Preview | Download |
- Model originally submitted by : Camille Laibe
- Submitted: Jun 23, 2010 10:12:01 AM
- Last Modified: Mar 2, 2020 12:15:53 PM
Revisions
-
Version: 4
- Submitted on: Mar 2, 2020 12:15:53 PM
- Submitted by: Ahmad Zyoud
- With comment: Automatically added model identifier BIOMD0000000917
-
Version: 2
- Submitted on: Jun 25, 2010 1:34:19 PM
- Submitted by: Camille Laibe
- With comment: Current version of Phillips2007_AscendingArousalSystem_SleepWakeDynamics
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Version: 1
- Submitted on: Jun 23, 2010 10:12:01 AM
- Submitted by: Camille Laibe
- With comment: Original import of Phillips2007_AscendingArousalSystem_SleepWakeDynamics
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: Variable used inside SBML models
Species | Initial Concentration/Amount |
---|---|
Ventrolateral preopticarea VLPO voltage OMIT 0027571 ; OMIT 0026787 ; Signal ; C70813 |
-10.0 mol |
Monoaminergic MA voltage C70813 ; OMIT 0026787 ; C73238 ; C62025 ; Signal ; C2321 |
1.0 mol |
Somnogen level H C207 |
10.0 mol |
Reactions | Rate | Parameters |
---|---|---|
=> Ventrolateral_preopticarea__VLPO__voltage | COMpartment*((v_vm*Qm+D)-Ventrolateral_preopticarea__VLPO__voltage)/(tau_v/3600) | Qm = 4.74258731775668; tau_v = 10.0; D = -10.7; v_vm = -1.9 |
=> Monoaminergic__MA__voltage | COMpartment*((v_maQao+v_mv*Qv)-Monoaminergic__MA__voltage)/(tau_m/3600) | v_mv = -1.9; Qv = 0.127101626308136; v_maQao = 1.0; tau_m = 10.0 |
=> Somnogen_level_H | COMpartment*(mu*Qm-Somnogen_level_H)/chi | chi = 10.8; Qm = 4.74258731775668; mu = 3.6 |
(added: 02 Mar 2020, 12:14:57, updated: 02 Mar 2020, 12:14:57)