Holmes2006 - Hill's model of muscle contraction

  public model
Model Identifier
BIOMD0000000677
Short description
Holmes2006 - Hill's model of muscle contraction

This model is described in the article:

Holmes JW.
Adv Physiol Educ 2006 Jun; 30(2): 67-72

Abstract:

A. V. Hill's 1938 paper "The heat of shortening and the dynamic constants of muscle" is an enduring classic, presenting detailed methods, meticulous experiments, and the model of muscle contraction that now bears Hill's name. Pairing a simulation based on Hill's model with a reading of his paper allows students to follow his thought process to discover key principles of muscle physiology and gain insight into how to develop quantitative models of physiological processes. In this article, the experience of the author using this approach in a graduate biomedical engineering course is outlined, along with suggestions for adapting this approach to other audiences.

This model is hosted on BioModels Database and identified by: BIOMD0000000677.

To cite BioModels Database, please use: Chelliah V et al. BioModels: ten-year anniversary. Nucl. Acids Res. 2015, 43(Database issue):D542-8.

To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

Format
SBML (L2V4)
Related Publication
  • Teaching from classic papers: Hill's model of muscle contraction.
  • Holmes JW
  • Advances in physiology education , 6/ 2006 , Volume 30 , Issue 2 , pages: 67-72 , PubMed ID: 16709736
  • Department of Biomedical Engineering, Columbia University, New York, New York 10027, USA. jh553@columbia.edu
  • A. V. Hill's 1938 paper "The heat of shortening and the dynamic constants of muscle" is an enduring classic, presenting detailed methods, meticulous experiments, and the model of muscle contraction that now bears Hill's name. Pairing a simulation based on Hill's model with a reading of his paper allows students to follow his thought process to discover key principles of muscle physiology and gain insight into how to develop quantitative models of physiological processes. In this article, the experience of the author using this approach in a graduate biomedical engineering course is outlined, along with suggestions for adapting this approach to other audiences.
Contributors
Submitter of the first revision: Camille Laibe
Submitter of this revision: administrator
Modellers: administrator, Camille Laibe

Metadata information

is (2 statements)
BioModels Database MODEL1006230007
BioModels Database BIOMD0000000677

isDescribedBy (2 statements)
PubMed 16709736
PubMed 16709736

isVersionOf (1 statement)
Gene Ontology muscle contraction


Curation status
Curated

Tags

Connected external resources

SBGN view in Newt Editor

Name Description Size Actions

Model files

BIOMD0000000677_url.xml SBML L2V4 representation of Holmes2006 - Hill\s model of muscle contraction 16.32 KB Preview | Download

Additional files

BIOMD0000000677-biopax2.owl Auto-generated BioPAX (Level 2) 3.22 KB Preview | Download
BIOMD0000000677-biopax3.owl Auto-generated BioPAX (Level 3) 3.26 KB Preview | Download
BIOMD0000000677.m Auto-generated Octave file 3.16 KB Preview | Download
BIOMD0000000677.pdf Auto-generated PDF file 131.93 KB Preview | Download
BIOMD0000000677.png Auto-generated Reaction graph (PNG) 4.27 KB Preview | Download
BIOMD0000000677.sci Auto-generated Scilab file 154.00 Bytes Preview | Download
BIOMD0000000677.svg Auto-generated Reaction graph (SVG) 845.00 Bytes Preview | Download
BIOMD0000000677.vcml Auto-generated VCML file 900.00 Bytes Preview | Download
BIOMD0000000677.xpp Auto-generated XPP file 1.73 KB Preview | Download
BIOMD0000000677_urn.xml Auto-generated SBML file with URNs 16.28 KB Preview | Download
MODEL1006230007.cps Curated and annotated COPASI file. 33.20 KB Preview | Download
MODEL1006230007.sedml SED-ML file for figure 1b of reference publication. 3.20 KB Preview | Download

  • Model originally submitted by : Camille Laibe
  • Submitted: Jun 23, 2010 10:11:52 AM
  • Last Modified: Mar 14, 2018 9:36:07 AM
Revisions
  • Version: 3 public model Download this version
    • Submitted on: Mar 14, 2018 9:36:07 AM
    • Submitted by: administrator
    • With comment: Current curated version of Holmes2006_MuscleContration
  • Version: 2 public model Download this version
    • Submitted on: Jun 25, 2010 1:07:23 PM
    • Submitted by: Camille Laibe
    • With comment: Current version of Holmes2006_MuscleContration
  • Version: 1 public model Download this version
    • Submitted on: Jun 23, 2010 10:11:52 AM
    • Submitted by: Camille Laibe
    • With comment: Original import of Holmes2006_MuscleContration

(*) You might be seeing discontinuous revisions as only public revisions are displayed here. Any private revisions unpublished model revision of this model will only be shown to the submitter and their collaborators.

Curator's comment:
(added: 22 Feb 2018, 17:05:26, updated: 22 Feb 2018, 17:05:26)
Figure 1b of the reference publication has been curated. Values for the black curves correspond to the left axis and the values for the blue curve correspond to the right axis. The simulation was performed in COPASI 4.22 (Build 170) and the figure was generated in MATLAB R2014b.