P-GSE40677-1 - P-GSE40677-1

normalization data transformation protocol
Illumina Genome Studio was used to generate the raw datafiles. The summarized data from the raw microarray data were log2 transformed and processed with force-positive background correction and quantile normalized, all using R statistical packages. Further, linear models and empirical Bayes method in Limma (Smyth, 2004) were used to access the differential expression between the wild types and transgenics. Quality control analyses were applied to detect the outlier samples. ID_REF = VALUE = Normalized log2 signal intensity
Experiment E-GEOD-40677