P-GSE42170-2 - P-GSE42170-2

Type
normalization data transformation protocol
Description
Illumina Casava1.8.1 software used for basecalling. Preprocessing, read trimming: shore 0.6.2 Preprocessing, quality filtering: shore 0.6.2 BS-mapping: bsmap 2.0 computation of methylation ratios: methratio.py (part of bsmap package) Genome_build: mm9 Supplementary_files_format_and_content: Bedgraph-format containing the genomic methylation ratios of the respective sample
Links
Experiment E-GEOD-42170