P-GSE14462-5 - P-GSE14462-5

Type
feature_extraction
Description
The signatures were matched against the reference genome of Oryza sativa L. ssp. indica (
) and assigned to each location at which a perfect match was found. For the sequencing number normalization, 5s rRNA was chosen as internal control. The sRNA locus expression comparison between the autotriploids and diploids were conducted with the toolkit as described by Moxon et al. [38]. Except the parameter of minimum number of (weighted) hits in SiLoCo analysis was adjusted to 30, the other parameters were set as default. In addition, the log2 ratio of the SiLoCo result was adjusted according to the internal control of 5S rRNA gene.
Links
Experiment E-GEOD-14462