P-MTAB-30843 - P-MTAB-30843

Data analysis was carried out using R (v 2.12) and BioConductor, a language for statistical computing. The data was processed using alternative Ensembl genome-based probeset definitions that create a single probeset per annotated gene. Because we have a one-to-one mapping of probesets to genes, we refer to genes rather than probesets. Variance Stabilisation Normalisation (VSN) and median polish summarisation were applied to obtain gene expression values, and differential gene regulation was assessed using limma limiting the false discovery rate (FDR) to 0.05.
Experiment E-MTAB-1475