Investigation Title	Transcription profiling of fat biopsies from normoglycaemic twins (MolPAGE study)
Comment[Submitted Name]	Affymetrix MolPAGE twin study
Experimental Design	family_history_design	co-expression_design	transcription profiling by array
Experimental Design Term Source REF		mo	EFO
Comment[ArrayExpressReleaseDate]	2008-08-30
Comment[SecondaryAccession]
Comment[AEMIAMESCORE]	4
Comment[ArrayExpressAccession]	E-TABM-325
Comment[MAGETAB TimeStamp_Version]	2011-06-29 04:47:47 Last Changed Rev: 14857
Experimental Factor Name	RNA integrity	Age	aRNA yield	Individual	BioSourceProvider
Experimental Factor Type	rna_integrity	age	a_rna_yield	individual	bio_source_provider
Experimental Factor Term Source REF
Person Last Name	Krestyaninova
Person First Name	Maria
Person Mid Initials
Person Email	mariak@ebi.ac.uk
Person Phone
Person Fax
Person Address
Person Affiliation	EBI, Microarray Informatics Team, Hinxton, CB10 1SD, UK
Person Roles	submitter
Person Roles Term Source REF
Quality Control Type
Quality Control Term Source REF
Replicate Type
Replicate Term Source REF
Normalization Type
Normalization Term Source REF
Date of Experiment
Public Release Date	2008-08-30
PubMed ID	22383892
Publication DOI	10.1371/journal.pgen.1002505
Publication Author List	Min JL, Nicholson G, Halgrimsdottir I, Almstrup K, Petri A, Barrett A, Travers M, Rayner NW, Magi R, Pettersson FH, Broxholme J, Neville MJ, Wills QF, Cheeseman J, GIANT Consortium, MolPAGE Consortium, Allen M, Holmes CC, Spector TD, Fleckner J, McCarthy MI, Karpe F, Lindgren CM, Zondervan KT.
Publication Title	Coexpression network analysis in abdominal and gluteal adipose tissue reveals regulatory genetic loci for metabolic syndrome and related phenotypes.
Publication Status
Publication Status Term Source REF
Experiment Description	Fat biopsies from normoglycaemic twins were analysed on Affymetrix arrays
Protocol Name	P-TABM-1763	P-TABM-1764	P-TABM-1765	P-TABM-1766	P-AFFY-6	P-TABM-1767
Protocol Type	specified_biomaterial_action	nucleic_acid_extraction	labeling	hybridization	feature_extraction	bioassay_data_transformation
Protocol Description	Fat biopsy abdominal RNA was extracted from twins for microarray analysis	RNA integrity value is a number 1-10	No protocol provided.	No protocol provided.	Title: Affymetrix CEL analysis. Description: 	Data was normalized using RMA method.
Protocol Parameters	Aliquot;Operator;Date and time;	Date and time;RNA integrity;Operator;aRNA yield;	fluorophore lot number;Labelling kit lot number;Operator;Aliquot;Date and time;	wash block number;Operator;Date and time;
Protocol Hardware
Protocol Software					MicroArraySuite 5.0
Protocol Contact
Protocol Term Source REF
SDRF File	E-TABM-325.sdrf.txt
Term Source Name		mo	nci_thesaurus	The MGED Ontology	ArrayExpress	mo	EFO
Term Source File		http://mged.sourceforge.net/ontologies/MGEDontology.php	http://nciterms.nci.nih.gov/NCIBrowser/Dictionary.do	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://www.ebi.ac.uk/arrayexpress	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://www.ebi.ac.uk/efo/
Term Source Version