Source Name Characteristics [Organism] Term Source REF Characteristics [Individual] Characteristics [DiseaseState] Term Source REF Characteristics [Age] Characteristics [TimeUnit] Characteristics [Sex] Term Source REF Characteristics [DiseaseStaging] Characteristics [OrganismPart] Term Source REF Characteristics [TumourGrading] Characteristics [ClinicalHistory] Protocol REF Protocol REF Sample Name Protocol REF Parameter Value [amount_of_starting_material] Parameter Value [processing_centre] Parameter Value [amplification_method] Extract Name Material Type Term Source REF Protocol REF Labeled Extract Name Label Material Type Term Source REF Protocol REF Hybridization Name Array Design REF Term Source REF Comment [Array Design URI] Factor Value [DiseaseState] Term Source REF Factor Value [Individual] Factor Value [amplification method] Factor Value [DiseaseStaging] Scan Name Array Data File Comment [ArrayExpress FTP file] Comment [ArrayExpress Data Retrieval URI] Protocol REF Derived Array Data Matrix File Comment [Derived ArrayExpress FTP file] Comment [Derived ArrayExpress Data Retrieval URI] aJ82ebv_1_W Homo sapiens ncbitax patient J82 immortalised cell line P-TABM-671 1ng DNA Warwick WGA aJ82ebv_1_W total_RNA The MGED Ontology P-TABM-672 aJ82ebv_1_W biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 aJ82ebv_1_W A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 immortalised cell line patient J82 whole genome amplification not applicable aJ82ebv_1_W.CEL aJ82ebv_1_W.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case2_aAVM Homo sapiens ncbitax case 2 large cell neuroendocrine carcinoma 70 years female mo normal macrophage "T2, N0, M0, stage 1b" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case2_aAVM P-TABM-671 558 cells Warwick WGA Case2_aAVM total_RNA The MGED Ontology P-TABM-672 Case2_aAVM biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case2_aAVM A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 large cell neuroendocrine carcinoma case 2 whole genome amplification normal Case2_aAVM.CEL Case2_aAVM.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 aJ82_3_W Homo sapiens ncbitax patient J82 tumour cell line P-TABM-671 3ng DNA Warwick WGA aJ82_3_W total_RNA The MGED Ontology P-TABM-672 aJ82_3_W biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 aJ82_3_W A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 tumour cell line patient J82 whole genome amplification not applicable aJ82_3_W.CEL aJ82_3_W.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case2_aTUM2 Homo sapiens ncbitax case 2 large cell neuroendocrine carcinoma 70 years female mo invasive tumour lung "T2, N0, M0, stage 1b" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case2_aTUM2 P-TABM-671 498 cells Warwick WGA Case2_aTUM2 total_RNA The MGED Ontology P-TABM-672 Case2_aTUM2 biotin biotin synthetic_DNA The MGED Ontology P-TABM-674 Case2_aTUM2 A-AFFY-65 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-65 large cell neuroendocrine carcinoma case 2 whole genome amplification invasive tumour Case2_aTUM2.CEL Case2_aTUM2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526768.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 aJ82_1_W Homo sapiens ncbitax patient J82 tumour cell line P-TABM-671 1ng DNA Warwick WGA aJ82_1_W total_RNA The MGED Ontology P-TABM-672 aJ82_1_W biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 aJ82_1_W A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 tumour cell line patient J82 whole genome amplification not applicable aJ82_1_W.CEL aJ82_1_W.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case2_aBE Homo sapiens ncbitax case 2 large cell neuroendocrine carcinoma 70 years female mo background epithelium lung "T2, N0, M0, stage 1b" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case2_aBE P-TABM-671 nk Warwick WGA Case2_aBE total_RNA The MGED Ontology P-TABM-672 Case2_aBE biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case2_aBE A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 large cell neuroendocrine carcinoma case 2 whole genome amplification background epithelium Case2_aBE.CEL Case2_aBE.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 nJ82ebv_P Homo sapiens ncbitax patient J82 immortalised cell line P-TABM-671 250ng DNA PICR none nJ82ebv_P total_RNA The MGED Ontology P-TABM-672 nJ82ebv_P biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 nJ82ebv_P A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 immortalised cell line patient J82 no amplification not applicable nJ82ebv_P.CEL nJ82ebv_P.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case1_aHYP Homo sapiens ncbitax case 1 squamous cell carcinoma nci_meta 65 years male hyperplastic epithelium lung "T2, N0, stage 1b" smoking history: 50 pack years P-TABM-669 P-TABM-670 Case1_aHYP P-TABM-671 816 cells Warwick WGA Case1_aHYP total_RNA The MGED Ontology P-TABM-672 Case1_aHYP biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case1_aHYP A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 squamous cell carcinoma nci_meta case 1 whole genome amplification hyperplastic epithelium Case1_aHYP.CEL Case1_aHYP.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case2_aOE Homo sapiens ncbitax case 2 large cell neuroendocrine carcinoma 70 years female mo overlying epithelium lung "T2, N0, M0, stage 1b" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case2_aOE P-TABM-671 419 cells Warwick WGA Case2_aOE total_RNA The MGED Ontology P-TABM-672 Case2_aOE biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case2_aOE A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 large cell neuroendocrine carcinoma case 2 whole genome amplification overlying epithelium Case2_aOE.CEL Case2_aOE.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case3_aTUM3 Homo sapiens ncbitax case 3 small cell lung cancer 47 years female mo invasive tumour lung "T1, N2, M0, stage 3" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case3_aTUM3 P-TABM-671 350 cells Warwick WGA Case3_aTUM3 total_RNA The MGED Ontology P-TABM-672 Case3_aTUM3 biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case3_aTUM3 A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 small cell lung cancer case 3 whole genome amplification invasive tumour Case3_aTUM3.CEL Case3_aTUM3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case3_aBE Homo sapiens ncbitax case 3 small cell lung cancer 47 years female mo background epithelium lung "T1, N2, M0, stage 3" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case3_aBE P-TABM-671 843 cells Warwick WGA Case3_aBE total_RNA The MGED Ontology P-TABM-672 Case3_aBE biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case3_aBE A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 small cell lung cancer case 3 whole genome amplification background epithelium Case3_aBE.CEL Case3_aBE.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case2_aTUM1 Homo sapiens ncbitax case 2 large cell neuroendocrine carcinoma 70 years female mo invasive tumour lung "T2, N0, M0, stage 1b" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case2_aTUM1 P-TABM-671 446 cells Warwick WGA Case2_aTUM1 total_RNA The MGED Ontology P-TABM-672 Case2_aTUM1 biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case2_aTUM1 A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 large cell neuroendocrine carcinoma case 2 whole genome amplification invasive tumour Case2_aTUM1.CEL Case2_aTUM1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case3_aTUM2 Homo sapiens ncbitax case 3 small cell lung cancer 47 years female mo invasive tumour lung "T1, N2, M0, stage 3" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case3_aTUM2 P-TABM-671 997 cells Warwick WGA Case3_aTUM2 total_RNA The MGED Ontology P-TABM-672 Case3_aTUM2 biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case3_aTUM2 A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 small cell lung cancer case 3 whole genome amplification invasive tumour Case3_aTUM2.CEL Case3_aTUM2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 nJ82_W Homo sapiens ncbitax patient J82 tumour cell line P-TABM-671 250ng DNA Warwick none nJ82_W total_RNA The MGED Ontology P-TABM-672 nJ82_W biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 nJ82_W A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 tumour cell line patient J82 no amplification not applicable nJ82_W.CEL nJ82_W.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case3_aOE Homo sapiens ncbitax case 3 small cell lung cancer 47 years female mo overlying epithelium lung "T1, N2, M0, stage 3" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case3_aOE P-TABM-671 200 cells Warwick WGA Case3_aOE total_RNA The MGED Ontology P-TABM-672 Case3_aOE biotin biotin synthetic_DNA The MGED Ontology P-TABM-674 Case3_aOE A-AFFY-65 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-65 small cell lung cancer case 3 whole genome amplification overlying epithelium Case3_aOE.CEL Case3_aOE.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526768.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case3_aLN Homo sapiens ncbitax case 3 small cell lung cancer 47 years female mo normal lymph node mo "T1, N2, M0, stage 3" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case3_aLN P-TABM-671 545 cells Warwick WGA Case3_aLN total_RNA The MGED Ontology P-TABM-672 Case3_aLN biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case3_aLN A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 small cell lung cancer case 3 whole genome amplification normal Case3_aLN.CEL Case3_aLN.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 nJ82_P Homo sapiens ncbitax patient J82 tumour cell line P-TABM-671 250ng DNA PICR none nJ82_P total_RNA The MGED Ontology P-TABM-672 nJ82_P biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 nJ82_P A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 tumour cell line patient J82 no amplification not applicable nJ82_P.CEL nJ82_P.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case3_aTUM1 Homo sapiens ncbitax case 3 small cell lung cancer 47 years female mo invasive tumour lung "T1, N2, M0, stage 3" smoking history: 30 pack years P-TABM-669 P-TABM-670 Case3_aTUM1 P-TABM-671 1300 cells Warwick WGA Case3_aTUM1 total_RNA The MGED Ontology P-TABM-672 Case3_aTUM1 biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case3_aTUM1 A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 small cell lung cancer case 3 whole genome amplification invasive tumour Case3_aTUM1.CEL Case3_aTUM1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 0904_MK19_10K_80J82 Homo sapiens ncbitax patient J82 mixed source cell line P-TABM-671 250ng DNA PICR none 0904_MK19_10K_80J82 total_RNA The MGED Ontology P-TABM-672 0904_MK19_10K_80J82 biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 0904_MK19_10K_80J82 A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 mixed source cell line patient J82 no amplification not applicable 0904_MK19_10K_80J82.CEL 0904_MK19_10K_80J82.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case3_nLN Homo sapiens ncbitax case 3 small cell lung cancer 47 years female mo normal lymph node mo "T1, N2, M0, stage 3" smoking history: 30 pack years P-TABM-669 Case3_nLN P-TABM-671 250ng DNA Warwick none Case3_nLN total_RNA The MGED Ontology P-TABM-672 Case3_nLN biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case3_nLN A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 small cell lung cancer case 3 no amplification normal Case3_nLN.CEL Case3_nLN.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case1_aLN Homo sapiens ncbitax case 1 squamous cell carcinoma nci_meta 65 years male normal lymph node mo "T2, N0, stage 1b" smoking history: 50 pack years P-TABM-669 P-TABM-670 Case1_aLN P-TABM-671 1035 cells Warwick WGA Case1_aLN total_RNA The MGED Ontology P-TABM-672 Case1_aLN biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case1_aLN A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 squamous cell carcinoma nci_meta case 1 whole genome amplification normal Case1_aLN.CEL Case1_aLN.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case3_nTB Homo sapiens ncbitax case 3 small cell lung cancer 47 years female mo invasive tumour lung "T1, N2, M0, stage 3" smoking history: 30 pack years P-TABM-669 Case3_nTB P-TABM-671 250ng DNA Warwick none Case3_nTB total_RNA The MGED Ontology P-TABM-672 Case3_nTB biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case3_nTB A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 small cell lung cancer case 3 no amplification invasive tumour Case3_nTB.CEL Case3_nTB.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Case1_aTUM Homo sapiens ncbitax case 1 squamous cell carcinoma nci_meta 65 years male invasive tumour lung "T2, N0, stage 1b" smoking history: 50 pack years P-TABM-669 P-TABM-670 Case1_aTUM P-TABM-671 1136 cells Warwick WGA Case1_aTUM total_RNA The MGED Ontology P-TABM-672 Case1_aTUM biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 Case1_aTUM A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 squamous cell carcinoma nci_meta case 1 whole genome amplification invasive tumour Case1_aTUM.CEL Case1_aTUM.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 0904_MK18_10K_90J82 Homo sapiens ncbitax patient J82 mixed source cell line P-TABM-671 250ng DNA PICR none 0904_MK18_10K_90J82 total_RNA The MGED Ontology P-TABM-672 0904_MK18_10K_90J82 biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 0904_MK18_10K_90J82 A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 mixed source cell line patient J82 no amplification not applicable 0904_MK18_10K_90J82.CEL 0904_MK18_10K_90J82.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 0904_MK20_10K_70J82 Homo sapiens ncbitax patient J82 mixed source cell line P-TABM-671 250ng DNA PICR none 0904_MK20_10K_70J82 total_RNA The MGED Ontology P-TABM-672 0904_MK20_10K_70J82 biotin biotin synthetic_DNA The MGED Ontology P-TABM-673 0904_MK20_10K_70J82 A-AFFY-64 ArrayExpress http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-AFFY-64 mixed source cell line patient J82 no amplification not applicable 0904_MK20_10K_70J82.CEL 0904_MK20_10K_70J82.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.raw.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881 Affymetrix:Protocol:WholeGenome E-TABM-134-processed-data-1343526767.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/TABM/E-TABM-134/E-TABM-134.processed.1.zip http://www.ebi.ac.uk/arrayexpress/query/dataselection?expid=1197115881