Investigation Title	Transcription profiling of breast cancer tumors of ductal and lobular types	
Comment[Submitted Name]	DL.tumors	
Experimental Design	disease_state_design	transcription profiling by array	
Experimental Design Term Source REF	mo	EFO	
Comment[ArrayExpressReleaseDate]	2007-03-27	
Comment[AEMIAMESCORE]	4	
Comment[ArrayExpressAccession]	E-SMDB-3962	
Comment[MAGETAB TimeStamp_Version]	2011-08-22 18:41:00 Last Changed Rev: 14857	
Experimental Factor Name	
Experimental Factor Type	
Experimental Factor Term Source REF	
Person Last Name	Demeter	Zhao	Langerod	Ji	
Person First Name	Janos	Hongjuan	Anita	Youngran	
Person Mid Initials	
Person Email	jdemeter@genome.stanford.edu	hongjuanz@hotmail.com	anita.langerod@labmed.uio.no	yji@stanford.edu	
Person Phone	726-0075	650-498-4922	6-2139	650 498-5082	
Person Fax	723-7016	650-723-0765	6-2139	650 725-3928	
Person Address	Dept. Genetics, CCSR 2255, Stanford, CA, USA, 94305	Urology, Edwards Building R116, 300 Pasteur Drive, Stanford, CA, USA	Surgery, MSLS P323, 1201 Welch Road, Stanford, California, USA, 94305	Surgery, MSLS Rm P323, 1201 Welch Rd, Stanford, CA, USA, 94305	
Person Affiliation	Stanford University	Stanford University	Stanford University	Stanford University	
Person Roles	submitter	submitter	submitter	submitter	
Person Roles Term Source REF	mo			mo	
Quality Control Type	
Quality Control Term Source REF	
Replicate Type	
Replicate Term Source REF	
Normalization Type	
Normalization Term Source REF	
Date of Experiment	
Public Release Date	2007-03-27	
PubMed ID	17277331	
Publication DOI	17277331	
Publication Author List	Nicolau M , Tibshirani R , Borresen-Dale AL , Jeffrey SS 	
Publication Title	Disease-Specific Genomic Analysis: Identifying the Signature of Pathologic Biology.	
Publication Status	journal_article	
Publication Status Term Source REF	The MGED Ontology	
Experiment Description	Breast cancer tumors of ductal (D) and lobular (L) type. Not all lobular tumors are "classical lobular" tumors. Experiment "BC2_Jeffrey_minus_G50_1" was denoted as BC-D-002.	
Protocol Name	URN:LSID:smd.stanford.edu:tagset.tagset\_no:25/MAGE.Protocol	
Protocol Type	feature_extraction	
Protocol Description	Title: Feature Extraction. Description: Software and parameters for feature extraction.	
Protocol Parameters	Datafile type;	
Protocol Hardware	
Protocol Software	
Protocol Contact	
Protocol Term Source REF	
SDRF File	E-SMDB-3962.sdrf.txt	
Term Source Name	mo	ArrayExpress	mo	EFO	The MGED Ontology	
Term Source File	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://www.ebi.ac.uk/arrayexpress	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://www.ebi.ac.uk/efo/	http://mged.sourceforge.net/ontologies/MGEDontology.php	
Term Source Version