Source Name	Characteristics[Organism]	Characteristics[NASC:Growth Stage]	Characteristics[GeneticModification]	Characteristics[Ecotype]	Characteristics[Genotype]	Characteristics[NASC:StockCode]	Material Type	Protocol REF	Parameter Value[location]	Parameter Value[Temperature]	Parameter Value[Lighting]	Parameter Value[Medium]	Sample Name	Characteristics[OrganismPart]	Material Type	Protocol REF	Sample Name	Material Type	Protocol REF	Labeled Extract Name	Label	Material Type	Protocol REF	Term Source REF	Hybridization Name	Array Design REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Parameter Value[Algorithm name]	Parameter Value[Upper left corner x coordinate]	Parameter Value[Upper left corner y coordinate]	Parameter Value[Upper right corner x coordinate]	Parameter Value[Upper right corner y coordinate]	Parameter Value[Lower right corner x coordinate]	Parameter Value[Lower right corner y coordinate]	Parameter Value[Lower left corner x coordinate]	Parameter Value[Lower left corner y coordinate]	Parameter Value[Percentile]	Parameter Value[Cell margin]	Parameter Value[Outlier high]	Parameter Value[Outlier low]	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Parameter Value[Algorithm name]	Parameter Value[Algorithm version]	Parameter Value[Baseline file]	Parameter Value[Alpha1]	Parameter Value[Alpha2]	Parameter Value[Tau]	Parameter Value[Gamma1H]	Parameter Value[Gamma1L]	Parameter Value[Gamma2H]	Parameter Value[Gamma2L]	Parameter Value[Perturbation]	Parameter Value[Normalization factor]	Parameter Value[Scale factor]	Parameter Value[Mask file]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	Factor Value[Genotype]
NASCBioSource:84	Arabidopsis thaliana	5.1	gene_knock_out	Ler-0	phyB mutant	Not in stock centre	whole_organism	P-MTAB-24002	Greenhouse	20 C	16 hour days	Soil/Perlite (3:1)	NASCBioSampleA:84	Rosette and Cauline Leaves	organism_part	NASCExtractProtocol:3	NASCExtract:80	RNA	NASCLabelProtocol:1	NASCLabeledExtract:80	biotin	RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	ArrayExpress	Affymetrix:PhysicalBioAssay:JC001_AG_A1-Casal-BSM	A-AFFY-16	ArrayExpress	Affymetrix:Protocol:Scan	ArrayExpress	Affymetrix:Protocol:Percentile	Percentile	233	236	4499	268	4468	4532	203	4500	75	2	1.5	1.004	CELJC001_AG_A1-Casal-BSM_JC001_AG_A1-Casal-BSM_CEL_externaldata.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-6/E-NASC-6.raw.1.zip	Affymetrix:Protocol:ExpressionStat	ExpressionStat	5	NA	0.04	0.06	0.015	0.0025	0.0025	0.003	0.003	1.1	1	1.280018	NA	CHPJC001_AG_A1-Casal-BSM_JC001_AG_A1-Casal-BSM_CHP_externaldata.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-6/E-NASC-6.processed.1.zip	phyB mutant
NASCBioSource:85	Arabidopsis thaliana	5.1	  	Ler-0	wild type	NW20	whole_organism	NASCGrowProt:85	Greenhouse	20 C	16 hour days	Soil/Perlite (3:1)	NASCBioSampleA:85	Rosette and Cauline Leaves	organism_part	NASCExtractProtocol:3	NASCExtract:81	RNA	NASCLabelProtocol:1	NASCLabeledExtract:81	biotin	RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	ArrayExpress	Affymetrix:PhysicalBioAssay:JC001_AG_A2-Casal-WTL	A-AFFY-16	ArrayExpress	Affymetrix:Protocol:Scan	ArrayExpress	Affymetrix:Protocol:Percentile	Percentile	234	234	4499	260	4475	4525	209	4499	75	2	1.5	1.004	CELJC001_AG_A2-Casal-WTL_JC001_AG_A2-Casal-WTL_CEL_externaldata.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-6/E-NASC-6.raw.1.zip	Affymetrix:Protocol:ExpressionStat	ExpressionStat	5	NA	0.04	0.06	0.015	0.0025	0.0025	0.003	0.003	1.1	1	1.102198	NA	CHPJC001_AG_A2-Casal-WTL_JC001_AG_A2-Casal-WTL_CHP_externaldata.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-6/E-NASC-6.processed.1.zip	wild type
NASCBioSource:86	Arabidopsis thaliana	5.1	gene_knock_out	Ler-0	phyA+cry1+cry2 mutant	Not in stock centre	whole_organism	P-MTAB-24003	Greenhouse	20 C	16 hour days	Soil/Perlite (3:1)	NASCBioSampleA:86	Rosette and Cauline Leaves	organism_part	NASCExtractProtocol:3	NASCExtract:82	RNA	NASCLabelProtocol:1	NASCLabeledExtract:82	biotin	RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	ArrayExpress	Affymetrix:PhysicalBioAssay:JC001_AG_A3-Casal-PCQ	A-AFFY-16	ArrayExpress	Affymetrix:Protocol:Scan	ArrayExpress	Affymetrix:Protocol:Percentile	Percentile	234	235	4499	264	4472	4529	206	4500	75	2	1.5	1.004	CELJC001_AG_A3-Casal-PCQ_JC001_AG_A3-Casal-PCQ_CEL_externaldata.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-6/E-NASC-6.raw.1.zip	Affymetrix:Protocol:ExpressionStat	ExpressionStat	5	NA	0.04	0.06	0.015	0.0025	0.0025	0.003	0.003	1.1	1	1.225316	NA	CHPJC001_AG_A3-Casal-PCQ_JC001_AG_A3-Casal-PCQ_CHP_externaldata.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-6/E-NASC-6.processed.1.zip	phyA+cry1+cry2 mutant
NASCBioSource:87	Arabidopsis thaliana	5.1	gene_knock_out	Ler-0	phyA+phyB+cry1+cry2 mutant	Not in stock centre	whole_organism	P-MTAB-24004	Greenhouse	20 C	16 hour days	Soil/Perlite (3:1)	NASCBioSampleA:87	Rosette and Cauline Leaves	organism_part	NASCExtractProtocol:3	NASCExtract:83	RNA	NASCLabelProtocol:1	NASCLabeledExtract:83	biotin	RNA	Affymetrix:Protocol:Hybridization-EukGE-WS2v4	ArrayExpress	Affymetrix:PhysicalBioAssay:JC001_AG_A4-Casal-A12	A-AFFY-16	ArrayExpress	Affymetrix:Protocol:Scan	ArrayExpress	Affymetrix:Protocol:Percentile	Percentile	235	233	4500	231	4504	4495	239	4498	75	2	1.5	1.004	CELJC001_AG_A4-Casal-A12_JC001_AG_A4-Casal-A12_CEL_externaldata.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-6/E-NASC-6.raw.1.zip	Affymetrix:Protocol:ExpressionStat	ExpressionStat	5	NA	0.04	0.06	0.015	0.0025	0.0025	0.003	0.003	1.1	1	1.38091	NA	CHPJC001_AG_A4-Casal-A12_JC001_AG_A4-Casal-A12_CHP_externaldata.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/NASC/E-NASC-6/E-NASC-6.processed.1.zip	phyA+phyB+cry1+cry2 mutant