Source Name	Material Type	Characteristics[Organism]	Characteristics [StrainOrLine]	Characteristics[BioSourceType]	Characteristics[BioSourceProvider]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Hybridization Name	Array Design REF	Comment [CombimatrixID]	Protocol REF	Term Source REF	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Derived Array Data Matrix File	Comment [Derived ArrayExpress FTP file]	Factor Value[DevelopmentalStage]	FactorValue [StrainOrLine]
Protoplasts_1	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT9	fresh_sample	Reski lab	P-MTAB-25301	ArrayExpress	P-MTAB-25302	ArrayExpress	P-MTAB-25305	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protoplasts_1	Cy5	P-MTAB-25307	ArrayExpress	H_Protoplasts_1	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-09-10_1_line3_0hI_300_30-70_635_feature_bg.txt	2008-09-10_1_line3_0hI_300_30-70_635_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protoplasts_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protoplasts	Gransden 2004 Reski lab generation WT9
Protoplasts_2	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT9	fresh_sample	Reski lab	P-MTAB-25301	ArrayExpress	P-MTAB-25302	ArrayExpress	P-MTAB-25305	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protoplasts_2	Cy5	P-MTAB-25307	ArrayExpress	H_Protoplasts_2	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-09-15_3_0hII_IIII_280_30_70_635_feature_bg.txt	2008-09-15_3_0hII_IIII_280_30_70_635_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protoplasts_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protoplasts	Gransden 2004 Reski lab generation WT9
Protoplasts_3	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT9	fresh_sample	Reski lab	P-MTAB-25301	ArrayExpress	P-MTAB-25302	ArrayExpress	P-MTAB-25305	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protoplasts_3	Cy5	P-MTAB-25307	ArrayExpress	H_Protoplasts_3	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-09-19_2_0hIV_280_30_40_635_feature_bg.txt	2008-09-19_2_0hIV_280_30_40_635_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protoplasts_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protoplasts	Gransden 2004 Reski lab generation WT9
Protonema_1	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT9	fresh_sample	Reski lab	P-MTAB-25299	ArrayExpress	  	  	P-MTAB-25304	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protonema_1	Cy5	P-MTAB-25307	ArrayExpress	H_Protonema_1	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-09-10_1_0-1_300_30_80_0635_feature_bg.txt	2008-09-10_1_0-1_300_30_80_0635_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protonema_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protonema	Gransden 2004 Reski lab generation WT9
Protonema_2	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT9	fresh_sample	Reski lab	P-MTAB-25299	ArrayExpress	  	  	P-MTAB-25304	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protonema_2	Cy5	P-MTAB-25307	ArrayExpress	H_Protonema_2	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-09-12_2_0-3_280_30_70_635_feature_bg.txt	2008-09-12_2_0-3_280_30_70_635_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protonema_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protonema	Gransden 2004 Reski lab generation WT9
Protonema_3	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT9	fresh_sample	Reski lab	P-MTAB-25299	ArrayExpress	  	  	P-MTAB-25304	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protonema_3	Cy5	P-MTAB-25307	ArrayExpress	H_Protonema_3	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-09-14_3_0-2_290_30_80_635_feature_bg.txt	2008-09-14_3_0-2_290_30_80_635_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protonema_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protonema	Gransden 2004 Reski lab generation WT9
Protonema_WT3_1	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT3	fresh_sample	Reski lab	P-MTAB-25300	ArrayExpress	  	  	P-MTAB-25304	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protonema_WT3_1	Cy5	P-MTAB-25307	ArrayExpress	H_Protonema_WT3_1	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-12-03_2_WT-1_285_30_40_635_feature_bg.txt	2008-12-03_2_WT-1_285_30_40_635_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protonema_WT3_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protonema	Gransden 2004 Reski lab generation WT3
Protonema_WT3_2	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT3	fresh_sample	Reski lab	P-MTAB-25300	ArrayExpress	  	  	P-MTAB-25304	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protonema_WT3_2	Cy5	P-MTAB-25307	ArrayExpress	H_Protonema_WT3_2	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-12-03_4_WT-3_290_30_40_635_feature_bg.txt	2008-12-03_4_WT-3_290_30_40_635_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protonema_WT3_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protonema	Gransden 2004 Reski lab generation WT3
Protonema_WT3_3	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT3	fresh_sample	Reski lab	P-MTAB-25300	ArrayExpress	  	  	P-MTAB-25304	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protonema_WT3_3	Cy5	P-MTAB-25307	ArrayExpress	H_Protonema_WT3_3	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-12-05_6_WT-2_295_30_45_635_feature_bg.txt	2008-12-05_6_WT-2_295_30_45_635_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protonema_WT3_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protonema	Gransden 2004 Reski lab generation WT3
Protonema_full_medium_1	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT9	fresh_sample	Reski lab	P-MTAB-25303	ArrayExpress	  	  	P-MTAB-25304	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protonema_full_medium_1	Cy5	P-MTAB-25307	ArrayExpress	H_Protonema_full_medium_1	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-10-17_WT-1_1_290_100_30_feature_bg.txt	2008-10-17_WT-1_1_290_100_30_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protonema_full_medium_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protonema	Gransden 2004 Reski lab generation WT9
Protonema_full_medium_2	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT9	fresh_sample	Reski lab	P-MTAB-25303	ArrayExpress	  	  	P-MTAB-25304	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protonema_full_medium_2	Cy5	P-MTAB-25307	ArrayExpress	H_Protonema_full_medium_2	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-10-24_WT-2_2_290_70_30_feature_bg.txt	2008-10-24_WT-2_2_290_70_30_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protonema_full_medium_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protonema	Gransden 2004 Reski lab generation WT9
Protonema_full_medium_3	cell	Physcomitrella patens	Gransden 2004 Reski lab generation WT9	fresh_sample	Reski lab	P-MTAB-25303	ArrayExpress	  	  	P-MTAB-25304	ArrayExpress	total_RNA	P-MTAB-25306	ArrayExpress	L_Protonema_full_medium_3	Cy5	P-MTAB-25307	ArrayExpress	H_Protonema_full_medium_3	A-MEXP-2174	Design6710	P-MTAB-25308	ArrayExpress	2008-10-30_WT-3_3_270_80_30_feature_bg.txt	2008-10-30_WT-3_3_270_80_30_feature_bg.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.raw.1.zip	P-MTAB-25309	ArrayExpress	Protonema_full_medium_normalized.gda.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-976/E-MTAB-976.processed.1.zip	protonema	Gransden 2004 Reski lab generation WT9