Source Name	Comment[ENA_SAMPLE]	Comment[BioSD_SAMPLE]	Characteristics[organism]	Characteristics[organism part]	Characteristics[metastatic site]	Characteristics[cell type]	Characteristics[cell line]	Characteristics[disease]	Material Type	Protocol REF	Performer	Protocol REF	Performer	Protocol REF	Performer	Protocol REF	Performer	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRAND]	Comment[LIBRARY_STRATEGY]	Comment[NOMINAL_LENGTH]	Comment[NOMINAL_SDEV]	Protocol REF	Performer	Assay Name	Technology Type	Comment[ENA_EXPERIMENT]	Scan Name	Comment[SUBMITTED_FILE_NAME]	Comment[ENA_RUN]	Comment[FASTQ_URI]	Comment[SPOT_LENGTH]	Comment[READ_INDEX_1_BASE_COORD]	Factor Value[compound]	Factor Value[dose]	Unit[dose unit]
Sample 1	ERS2196189	SAMEA104584907	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 1	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 1	sequencing assay	ERX2339178	BKM10160511_S1_R1_fastq.gz	BKM10160511_S1_R1_fastq.gz	ERR2287652	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/002/ERR2287652/ERR2287652_1.fastq.gz	70	36	none	  	    
Sample 1	ERS2196189	SAMEA104584907	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 1	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 1	sequencing assay	ERX2339178	BKM10160511_S1_R2_fastq.gz	BKM10160511_S1_R2_fastq.gz	ERR2287652	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/002/ERR2287652/ERR2287652_2.fastq.gz	72	37	none	  	    
Sample 2	ERS2196190	SAMEA104584908	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 2	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 2	sequencing assay	ERX2339179	BKM10160511_S2_R1_fastq.gz	BKM10160511_S2_R1_fastq.gz	ERR2287653	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/003/ERR2287653/ERR2287653_1.fastq.gz	72	37	none	  	    
Sample 2	ERS2196190	SAMEA104584908	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 2	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 2	sequencing assay	ERX2339179	BKM10160511_S2_R2_fastq.gz	BKM10160511_S2_R2_fastq.gz	ERR2287653	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/003/ERR2287653/ERR2287653_2.fastq.gz	72	37	none	  	    
Sample 3	ERS2196191	SAMEA104584909	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 3	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 3	sequencing assay	ERX2339180	BKM10160511_S3_R1_fastq.gz	BKM10160511_S3_R1_fastq.gz	ERR2287654	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/004/ERR2287654/ERR2287654_1.fastq.gz	72	37	none	  	    
Sample 3	ERS2196191	SAMEA104584909	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 3	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 3	sequencing assay	ERX2339180	BKM10160511_S3_R2_fastq.gz	BKM10160511_S3_R2_fastq.gz	ERR2287654	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/004/ERR2287654/ERR2287654_2.fastq.gz	64	33	none	  	    
Sample 4	ERS2196192	SAMEA104584910	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 4	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 4	sequencing assay	ERX2339181	BKM10160511_S4_R1_fastq.gz	BKM10160511_S4_R1_fastq.gz	ERR2287655	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/005/ERR2287655/ERR2287655_1.fastq.gz	72	37	neratinib	250	nanomolar
Sample 4	ERS2196192	SAMEA104584910	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 4	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 4	sequencing assay	ERX2339181	BKM10160511_S4_R2_fastq.gz	BKM10160511_S4_R2_fastq.gz	ERR2287655	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/005/ERR2287655/ERR2287655_2.fastq.gz	72	37	neratinib	250	nanomolar
Sample 5	ERS2196193	SAMEA104584911	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 5	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 5	sequencing assay	ERX2339182	BKM10160511_S5_R1_fastq.gz	BKM10160511_S5_R1_fastq.gz	ERR2287656	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/006/ERR2287656/ERR2287656_1.fastq.gz	70	36	neratinib	250	nanomolar
Sample 5	ERS2196193	SAMEA104584911	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 5	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 5	sequencing assay	ERX2339182	BKM10160511_S5_R2_fastq.gz	BKM10160511_S5_R2_fastq.gz	ERR2287656	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/006/ERR2287656/ERR2287656_2.fastq.gz	72	37	neratinib	250	nanomolar
Sample 6	ERS2196194	SAMEA104584912	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 6	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 6	sequencing assay	ERX2339183	BKM10160511_S6_R1_fastq.gz	BKM10160511_S6_R1_fastq.gz	ERR2287657	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/007/ERR2287657/ERR2287657_1.fastq.gz	72	37	neratinib	250	nanomolar
Sample 6	ERS2196194	SAMEA104584912	Homo sapiens	lung	alveolus	epithelial cell	NCI-H358	bronchioloalveolar carcinoma	cell	P-MTAB-71894	Bjorn Kruspig	P-MTAB-71892	Bjorn Kruspig	P-MTAB-71893	Bjorn Kruspig	P-MTAB-71895	Bjorn Kruspig	P-MTAB-71896	Billy Clark	Sample 6	PAIRED	PolyA	TRANSCRIPTOMIC	first strand	RNA-Seq	36	2	P-MTAB-71897	Billy Clark	Sample 6	sequencing assay	ERX2339183	BKM10160511_S6_R2_fastq.gz	BKM10160511_S6_R2_fastq.gz	ERR2287657	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR228/007/ERR2287657/ERR2287657_2.fastq.gz	72	37	neratinib	250	nanomolar