Source Name Comment[ENA_SAMPLE] Comment[BioSD_SAMPLE] Characteristics[organism] Characteristics[stimulus] Characteristics[genotype] Material Type Protocol REF Performer Protocol REF Performer Protocol REF Performer Protocol REF Performer Extract Name Comment[LIBRARY_LAYOUT] Comment[LIBRARY_SELECTION] Comment[LIBRARY_SOURCE] Comment[LIBRARY_STRAND] Comment[LIBRARY_STRATEGY] Protocol REF Performer Assay Name Technology Type Comment[ENA_EXPERIMENT] Scan Name Comment[SUBMITTED_FILE_NAME] Comment[ENA_RUN] Comment[FASTQ_URI] Protocol REF Performer Protocol REF Performer Derived Array Data File Comment [Derived ArrayExpress FTP file] Factor Value[stimulus] Factor Value[genotype] Sample 1 ERS1266510 SAMEA4355061 Xanthomonas campestris pv. campestris dark wild type genotype whole organism P-MTAB-51132 Hernán R. Bonomi P-MTAB-51131 Hernán R. Bonomi P-MTAB-51133 Gabriela Sycz P-MTAB-51134 McGill University and Génome Québec Innovation Centre Sample 1 SINGLE Hybrid Selection TRANSCRIPTOMIC second strand RNA-Seq P-MTAB-51137 McGill University and Génome Québec Innovation Centre Sample 1 sequencing assay ERX1617955 HI.3533.008.Index_2.Xcc_WT_DARK_1_R1.fastq.gz HI.3533.008.Index_2.Xcc_WT_DARK_1_R1.fastq.gz ERR1547185 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/005/ERR1547185/ERR1547185.fastq.gz P-MTAB-51135 Rodrigo Sieira P-MTAB-51136 Rodrigo Sieira Counts_RNAseq_Xantho_Index_2.Xcc_WT_DARK_1_R1 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-4958/E-MTAB-4958.processed.1.zip dark wild type genotype Sample 2 ERS1266511 SAMEA4355062 Xanthomonas campestris pv. campestris dark wild type genotype whole organism P-MTAB-51132 Hernán R. Bonomi P-MTAB-51131 Hernán R. Bonomi P-MTAB-51133 Gabriela Sycz P-MTAB-51134 McGill University and Génome Québec Innovation Centre Sample 2 SINGLE Hybrid Selection TRANSCRIPTOMIC second strand RNA-Seq P-MTAB-51137 McGill University and Génome Québec Innovation Centre Sample 2 sequencing assay ERX1617956 HI.3533.008.Index_13.Xcc_WT_DARK_2_R1.fastq.gz HI.3533.008.Index_13.Xcc_WT_DARK_2_R1.fastq.gz ERR1547186 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/006/ERR1547186/ERR1547186.fastq.gz P-MTAB-51135 Rodrigo Sieira P-MTAB-51136 Rodrigo Sieira Counts_RNAseq_Xantho_Index_13.Xcc_WT_DARK_2_R1 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-4958/E-MTAB-4958.processed.1.zip dark wild type genotype Sample 3 ERS1266512 SAMEA4355063 Xanthomonas campestris pv. campestris far-red wild type genotype whole organism P-MTAB-51132 Hernán R. Bonomi P-MTAB-51131 Hernán R. Bonomi P-MTAB-51133 Gabriela Sycz P-MTAB-51134 McGill University and Génome Québec Innovation Centre Sample 3 SINGLE Hybrid Selection TRANSCRIPTOMIC second strand RNA-Seq P-MTAB-51137 McGill University and Génome Québec Innovation Centre Sample 3 sequencing assay ERX1617957 HI.3533.008.Index_25.Xcc_WT_FR_1_R1.fastq.gz HI.3533.008.Index_25.Xcc_WT_FR_1_R1.fastq.gz ERR1547187 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/007/ERR1547187/ERR1547187.fastq.gz P-MTAB-51135 Rodrigo Sieira P-MTAB-51136 Rodrigo Sieira Counts_RNAseq_Xantho_Index_25.Xcc_WT_FR_1_R1 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-4958/E-MTAB-4958.processed.1.zip far-red wild type genotype Sample 4 ERS1266513 SAMEA4355064 Xanthomonas campestris pv. campestris far-red wild type genotype whole organism P-MTAB-51132 Hernán R. Bonomi P-MTAB-51131 Hernán R. Bonomi P-MTAB-51133 Gabriela Sycz P-MTAB-51134 McGill University and Génome Québec Innovation Centre Sample 4 SINGLE Hybrid Selection TRANSCRIPTOMIC second strand RNA-Seq P-MTAB-51137 McGill University and Génome Québec Innovation Centre Sample 4 sequencing assay ERX1617958 HI.3533.008.Index_21.Xcc_WT_FR_2_R1.fastq.gz HI.3533.008.Index_21.Xcc_WT_FR_2_R1.fastq.gz ERR1547188 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/008/ERR1547188/ERR1547188.fastq.gz P-MTAB-51135 Rodrigo Sieira P-MTAB-51136 Rodrigo Sieira Counts_RNAseq_Xantho_Index_21.Xcc_WT_FR_2_R1 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-4958/E-MTAB-4958.processed.1.zip far-red wild type genotype Sample 5 ERS1266514 SAMEA4355065 Xanthomonas campestris pv. campestris far-red XccbphP::Spcr + pXccBphP whole organism P-MTAB-51132 Hernán R. Bonomi P-MTAB-51131 Hernán R. Bonomi P-MTAB-51133 Gabriela Sycz P-MTAB-51134 McGill University and Génome Québec Innovation Centre Sample 5 SINGLE Hybrid Selection TRANSCRIPTOMIC second strand RNA-Seq P-MTAB-51137 McGill University and Génome Québec Innovation Centre Sample 5 sequencing assay ERX1617959 HI.3533.008.Index_27.Xcc_pXccBphP_FR_1_R1.fastq.gz HI.3533.008.Index_27.Xcc_pXccBphP_FR_1_R1.fastq.gz ERR1547189 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/009/ERR1547189/ERR1547189.fastq.gz P-MTAB-51135 Rodrigo Sieira P-MTAB-51136 Rodrigo Sieira Counts_RNAseq_Xantho_Index_27.Xcc_pXccBphP_FR_1_R1 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-4958/E-MTAB-4958.processed.1.zip far-red XccbphP::Spcr + pXccBphP Sample 6 ERS1266515 SAMEA4355066 Xanthomonas campestris pv. campestris far-red XccbphP::Spcr + pXccBphP whole organism P-MTAB-51132 Hernán R. Bonomi P-MTAB-51131 Hernán R. Bonomi P-MTAB-51133 Gabriela Sycz P-MTAB-51134 McGill University and Génome Québec Innovation Centre Sample 6 SINGLE Hybrid Selection TRANSCRIPTOMIC second strand RNA-Seq P-MTAB-51137 McGill University and Génome Québec Innovation Centre Sample 6 sequencing assay ERX1617960 HI.3533.008.Index_15.Xcc_pXccBphP_FR_2_R1.fastq.gz HI.3533.008.Index_15.Xcc_pXccBphP_FR_2_R1.fastq.gz ERR1547190 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR154/000/ERR1547190/ERR1547190.fastq.gz P-MTAB-51135 Rodrigo Sieira P-MTAB-51136 Rodrigo Sieira Counts_RNAseq_Xantho_Index_15.Xcc_pXccBphP_FR_2_R1 ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/MTAB/E-MTAB-4958/E-MTAB-4958.processed.1.zip far-red XccbphP::Spcr + pXccBphP