Comment[ArrayExpressAccession]	E-MTAB-4625
MAGE-TAB Version	1.1
Investigation Title	RNA-Seq analysis in bovine muscle
Comment[Submitted Name]	RNA-Seq analysis in bovine muscle
Experiment Description	RNA-Seq analysis in bovine muscle
Experimental Design	genotype design
Experimental Design Term Source REF	EFO
Experimental Design Term Accession Number	EFO_0001748
Experimental Factor Name	individual
Experimental Factor Type	individual
Experimental Factor Term Source REF	EFO
Experimental Factor Term Accession Number	EFO_0000542
Person Last Name	ROCHA
Person First Name	Dominique
Person Mid Initials	
Person Email	dominique.rocha@jouy.inra.fr
Person Phone	
Person Fax	
Person Address	France
Person Affiliation	INRA
Person Roles	submitter
Public Release Date	2016-12-30
Protocol Name	P-MTAB-49450	P-MTAB-49451	P-MTAB-49452	P-MTAB-49453
Protocol Type	treatment protocol	nucleic acid extraction protocol	nucleic acid library construction protocol	nucleic acid sequencing protocol
Protocol Term Source REF	EFO	EFO	EFO	EFO
Protocol Term Accession Number	EFO_0003969	EFO_0002944	EFO_0004184	EFO_0004170
Protocol Description	muscle biopsies were obtained at the slaughterhouse	Qiagen RNAeasy Midi protocol	4 ug of total RNA were used with Illumina TruSeq RNA sample preparation kit to make the paired-end RNA-Seq libraries; size selection of 200+/-25 bp fragments	Illumina TruSeq SBS v3-HS protocol; 2x100 bp
Protocol Hardware				Illumina HiSeq 2000
Protocol Software				
Term Source Name	EFO
Term Source File	http://www.ebi.ac.uk/efo/
Term Source Version	
Comment[AEExperimentType]	RNA-seq of coding RNA
Comment[SequenceDataURI]	http://www.ebi.ac.uk/ena/data/view/ERR1360992-ERR1360999
Comment[SecondaryAccession]	ERP015142
SDRF File	E-MTAB-4625.sdrf.txt