Comment[ArrayExpressAccession]	E-MTAB-3659
MAGE-TAB Version	1.1					
Comment[AEExperimentDisplayName]	Gene expression profiling by array of Arabidopsis tt2 mutant					
Investigation Title	Arabidopsis transparent testa 2 versus wild type					
Comment[Submitted Name]	Arabidopsis transparent testa 2 versus wild type
Experiment Description	Analysis of global gene expression of tt2 mutant in comparison with control in developing seeds of Arabidopsis					
Experimental Design	genotype design					
Experimental Design Term Source REF	EFO					
Experimental Design Term Accession Number	EFO_0001748					
Experimental Factor Name	genotype					
Experimental Factor Type	genotype					
Experimental Factor Term Source REF	EFO					
Experimental Factor Term Accession Number	EFO_0000513					
Person Last Name	pang					
Person First Name	yongzhen					
Person Mid Initials						
Person Email	yzhpang@ibcas.ac.cn					
Person Phone						
Person Fax						
Person Address						
Person Affiliation						
Person Roles	submitter					
Date of Experiment	2015-06-15					
Public Release Date	2016-06-15					
Protocol Name	P-MTAB-45221	P-MTAB-45222	P-MTAB-45223	P-MTAB-45224	P-MTAB-45225	P-MTAB-45226
Protocol Type	sample collection protocol	nucleic acid extraction protocol	nucleic acid labeling protocol	nucleic acid hybridization to array protocol	array scanning and feature extraction protocol	normalization data transformation protocol
Protocol Term Source REF	EFO	EFO	EFO	EFO	EFO	EFO
Protocol Term Accession Number	EFO_0005518	EFO_0002944	EFO_0003813	EFO_0003815	EFO_0003814	EFO_0003816
Protocol Description	the 6-day-old siliques were collected  for RNA extraction	RNA were extrated with CTAB-based method	'according to the manufactures'' instruction'	'according to the manufactures'' instruction'	'according to the manufactures'' instruction'	as described by Pang et al., 2008
Protocol Hardware						
Protocol Software						
Term Source Name	ArrayExpress	EFO
Term Source File	http://www.ebi.ac.uk/arrayexpress/	http://www.ebi.ac.uk/efo/				
Term Source Version						
Comment[AEExperimentType]	transcription profiling by array					
SDRF File	E-MTAB-3659.sdrf.txt